View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4186_low_17 (Length: 258)
Name: NF4186_low_17
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4186_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 39521237 - 39521364
Alignment:
| Q |
1 |
tctttaaatataaatataaattataatcaccaccaccaccgaatactc----attcgttcacgtgcgaagccattcattcctcctcctccatgacaatgg |
96 |
Q |
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| T |
39521237 |
tctttaaatataaatataaattataatcaccaccaccaccgaatactcactcattcgttcacgtgcgaagccattcattcctcctcctccatgacaatgg |
39521336 |
T |
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| Q |
97 |
ccgtcgattcctcctcttttcaggtaac |
124 |
Q |
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| T |
39521337 |
ccgtcgattcctcctcttttcaggtaac |
39521364 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 39521440 - 39521499
Alignment:
| Q |
194 |
acttcactactttcaaccgaatccgaatctcaacttgttcattgttctttttcttctctct |
254 |
Q |
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| T |
39521440 |
acttcactcctttcaaccgaatccgaatctcaacttgttcattgttc-ttttcttctctct |
39521499 |
T |
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