View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4186_low_19 (Length: 210)
Name: NF4186_low_19
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4186_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 10888062 - 10887887
Alignment:
| Q |
20 |
tccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcatta |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
10888062 |
tccacatcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgctttcttcggcactgccttcatcattcatta |
10887963 |
T |
|
| Q |
120 |
cgatgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatg |
195 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
10887962 |
cgatgatgatgaagacgaagtagtcgacaattctgcaaaacccaccggaggagttgtgccgaagaagctacctatg |
10887887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 10866312 - 10866426
Alignment:
| Q |
20 |
tccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcatta |
119 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||| |
|
|
| T |
10866312 |
tccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcatta |
10866411 |
T |
|
| Q |
120 |
cgatgatgatgaaga |
134 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
10866412 |
cgatgaagaagaaga |
10866426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 10873993 - 10873879
Alignment:
| Q |
20 |
tccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcatta |
119 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||| |
|
|
| T |
10873993 |
tccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcatta |
10873894 |
T |
|
| Q |
120 |
cgatgatgatgaaga |
134 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
10873893 |
cgatgaagaagaaga |
10873879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 10879064 - 10878950
Alignment:
| Q |
20 |
tccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcatta |
119 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||| |
|
|
| T |
10879064 |
tccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcatta |
10878965 |
T |
|
| Q |
120 |
cgatgatgatgaaga |
134 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
10878964 |
cgatgaagaagaaga |
10878950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 10884135 - 10884021
Alignment:
| Q |
20 |
tccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcatta |
119 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||| |
|
|
| T |
10884135 |
tccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcatta |
10884036 |
T |
|
| Q |
120 |
cgatgatgatgaaga |
134 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
10884035 |
cgatgaagaagaaga |
10884021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 39675885 - 39676020
Alignment:
| Q |
20 |
tccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcatta |
119 |
Q |
| |
|
|||| ||||||||| |||| |||||| ||||| ||||||||||||| |||| | | ||||||||| ||||| || ||| |||||||||| ||||||| |
|
|
| T |
39675885 |
tccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttcatccttcatta |
39675984 |
T |
|
| Q |
120 |
cgatgatgatgaagacgaagttgtcgacatttctgc |
155 |
Q |
| |
|
|||||| || ||||| ||||||| |||||| |||| |
|
|
| T |
39675985 |
cgatgaagaagaagatgaagttgctgacattgctgc |
39676020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 10045886 - 10045968
Alignment:
| Q |
28 |
ctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcat |
110 |
Q |
| |
|
|||||| |||||||||||| | ||| ||||||||||| |||||||| | |||||||| ||||| ||||||| || |||||| |
|
|
| T |
10045886 |
ctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttcat |
10045968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University