View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4186_low_2 (Length: 572)
Name: NF4186_low_2
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4186_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 52344261 - 52343868
Alignment:
| Q |
17 |
atatatacttattttattttgtgatttcatatagatcaatctatgaaatgggacaagaacccaagatttgtttgttcccagaacgatttatgagtggttg |
116 |
Q |
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| T |
52344261 |
atatatacttattttattttatgatttcatatagatcaatctatgaaatgggacaagaacccaagatttgtttgttcctaaaacgatttatgagtggttg |
52344162 |
T |
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| Q |
117 |
gtcaaggttgctgggttctgtgagaatcgaaacatgggattgaaaagttgttgtgtgccaacttgttgtctgagagtgatgggaattgtgtgaatcaatt |
216 |
Q |
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| T |
52344161 |
gtcaaggttgctgggttctgtgagaatcgaaacatgggattgaaaagttgttgtgtgccaacttgttgtctgagagtgatgggaattgtatgaatcaatt |
52344062 |
T |
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| Q |
217 |
aatcatttcggtggttcctttcgtcattaatggtggatgagaaagagaggaaaggagggaaagagcgagggtgagagagtggggaagtttctaatacaac |
316 |
Q |
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| T |
52344061 |
aatcatttcggtggttcctttcgtcattaatggtggatgagaaagagaggaaaggagggaaagagcgagggtgagagagtggggaagtttctaatacaac |
52343962 |
T |
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| Q |
317 |
ataaacttatgatagaaatcacaaatgtcagacagataggattaagaaaaggaaaatgtttaatttatcatatcatttggtgcgtcaaagggaa |
410 |
Q |
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| T |
52343961 |
ataaacttgtgatagaaatcacaaatgtcagacagataggattaagaaaaggaaaatgtttaatttatcatatcctttggtgcgtcaaacggaa |
52343868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 434 - 571
Target Start/End: Complemental strand, 52343655 - 52343512
Alignment:
| Q |
434 |
atcaaacaataaaaatgcaaataaaaaggttaaaatatctgaatttggtatctgtaac------catgtaaaggaatnnnnnnnnntgagggtaacttgg |
527 |
Q |
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| T |
52343655 |
atcaaacaataaaaatgcaaataaaaaggttaaaatctctgaatttggtatctgtaactgtaaccatgtaaaggaataaaaaaaaatgagggtaacttgg |
52343556 |
T |
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| Q |
528 |
ctttatatataggagtgtgttcaaagttgttagtattatctacc |
571 |
Q |
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| T |
52343555 |
ctttatatataggagtgtgttcaaagttgttaatattatctacc |
52343512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 12800293 - 12800354
Alignment:
| Q |
32 |
attttgtgatttcatatagatcaatctatgaaatgggacaagaacccaagatttgtttgttc |
93 |
Q |
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| T |
12800293 |
attttgtgatttcatatagatctataaataaaatgggacaagaactcaatatttgtttgttc |
12800354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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