View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4186_low_20 (Length: 210)
Name: NF4186_low_20
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4186_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 12013315 - 12013139
Alignment:
| Q |
14 |
ctgtggtggaagtttctctatgttaagtatgttaactgttgaaactggtttgaagtcggtaatggttttgcatattgagttgttcttacttttgcaggcg |
113 |
Q |
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| T |
12013315 |
ctgtggtggaagtttctccatgtta----tgttaactgttgaaactggtttgaagtcggtaatggttttgcatattgagttgttcttacttttgcaggcg |
12013220 |
T |
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| Q |
114 |
gcactatctgatgaagaatcgagaagggtaataacacaaacacttgagtcagctaaagaatgcattcaaataaattattat |
194 |
Q |
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| T |
12013219 |
gcactatctgatgaagaatcgagaagggtaataacacaaacacttgagtcagctaaagaatgcattcaaataaattattat |
12013139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 11996817 - 11996736
Alignment:
| Q |
113 |
ggcactatctgatgaagaatcgagaagggtaataacacaaacacttgagtcagctaaagaatgcattcaaataaattattat |
194 |
Q |
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| T |
11996817 |
ggcactacctgatgaagaattgagaagggcagtaacacaaacatatgagtcagctaaagaatgcattcaaataaattattat |
11996736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 11988105 - 11988024
Alignment:
| Q |
113 |
ggcactatctgatgaagaatcgagaagggtaataacacaaacacttgagtcagctaaagaatgcattcaaataaattattat |
194 |
Q |
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| T |
11988105 |
ggcactacctgatgaagaattgagaagggcagtaacacaaacatatgagtcagctaaagaatgcatccaaataaattattat |
11988024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 12008757 - 12008680
Alignment:
| Q |
114 |
gcactatctgatgaagaatcgagaagggtaataacacaaacacttgagtcagctaaagaatgcattcaaataaattat |
191 |
Q |
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| T |
12008757 |
gcactgtctgatgaagaattgaaaacggcagtaacacaaaaatttgagtcagctaaagaatgcattcaaataaattat |
12008680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 12003306 - 12003225
Alignment:
| Q |
113 |
ggcactatctgatgaagaatcgagaagggtaataacacaaacacttgagtcagctaaagaatgcattcaaataaattattat |
194 |
Q |
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| T |
12003306 |
ggcacaatctgatgaggaattgagaaggacaatgacatatacatttgagtcagctaaagaatgcatagaaataaattattat |
12003225 |
T |
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