View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4186_low_3 (Length: 565)
Name: NF4186_low_3
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4186_low_3 |
 | |
|
| [»] scaffold0363 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Complemental strand, 5569087 - 5568550
Alignment:
| Q |
16 |
ataatcatccaggtcaattagagaaccatgatgaaaacatcggtattaagacaagtggattgataaaatataattttaatgtatgcaaagactaaaaacc |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5569087 |
ataatcatccagttcaattagagaaccatgatgaaaacatcggtattaagacaagtggattgataaaatataattttaatgtatacaaagactaaaaacc |
5568988 |
T |
|
| Q |
116 |
tgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttctcttgcttgtgttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568987 |
tgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcttggttctcttgcttgtgttt |
5568888 |
T |
|
| Q |
216 |
cgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttg |
315 |
Q |
| |
|
||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
5568887 |
cgccaatgcactgccataactcccggtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaatcacaccaatgttgtcgtcttcatttttg |
5568788 |
T |
|
| Q |
316 |
ttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568787 |
ttacggcactccattagttcaacaagttcattcaaacaccatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattg |
5568688 |
T |
|
| Q |
416 |
ctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaggtatgtaaataggttcgggaaagagcagcgtgaagatgacttgt |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568687 |
ctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaagtatgtaaataggttcgggaaagagcagcgtgaagatgacttgt |
5568588 |
T |
|
| Q |
516 |
gaaaccagcgcgagtatcttcgcctcgaaagctgatga |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5568587 |
gaaaccagcgcgagtatcttcgcctcgaaagctgatga |
5568550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 102 - 553
Target Start/End: Complemental strand, 14403574 - 14403120
Alignment:
| Q |
102 |
aaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttc |
201 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||| |
|
|
| T |
14403574 |
aaagactaaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttg |
14403475 |
T |
|
| Q |
202 |
tcttgct---tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgt |
298 |
Q |
| |
|
||||||| | ||||| | |||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
14403474 |
tcttgctccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgt |
14403375 |
T |
|
| Q |
299 |
tgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacag |
398 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||||| ||||| ||||||||| |||||||||| || |||||||| ||||||||||||||||| || |
|
|
| T |
14403374 |
tgtcatcttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaag |
14403275 |
T |
|
| Q |
399 |
agttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaggtatgtaaataggttcgggaaagagca |
498 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
14403274 |
agtggattgtttgattgctttaacaagttctgaccaaacatcatctcctttctcgatcttgtagtctatgtaggtatgtaaatgggttcggcaaagagca |
14403175 |
T |
|
| Q |
499 |
gcgtgaagatgacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgatga |
553 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
14403174 |
gcgtgaagatggcttgtgaaacaagttcgagtatcttcgcctcgaaagctgatga |
14403120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 77 - 553
Target Start/End: Original strand, 6313483 - 6313963
Alignment:
| Q |
77 |
gataaaatataattttaatgtatgcaaagact-aaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaat |
175 |
Q |
| |
|
|||||||| ||||||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
6313483 |
gataaaatttaattttaatgtatgcaaaaacagaaaaacctgtatgtggtggaatgaaaaccagacaaattagctgcttgaaaaagagcattcttccaat |
6313582 |
T |
|
| Q |
176 |
tttgcatcatcttatcatcttggttctcttg---cttgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatg |
272 |
Q |
| |
|
||||||||||||||||||| | || |||| ||||||||| |||||| |||||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
6313583 |
tttgcatcatcttatcatcatttttgccttgtttcttgtgtttaatcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatg |
6313682 |
T |
|
| Q |
273 |
gtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatag |
372 |
Q |
| |
|
||||||||| ||||||||| |||| ||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
6313683 |
gtagaacactggaataacaacaaccttgtcatcttcatttttgttacaacactccattatttcaacaagttcgttcaaacaccatgttgaagaggcatag |
6313782 |
T |
|
| Q |
373 |
ttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtagg |
472 |
Q |
| |
|
|| || |||||||| |||||||| | ||| |||||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6313783 |
ttttccgagaacaccacaagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtagg |
6313882 |
T |
|
| Q |
473 |
tatgtaaataggttcgggaaagagcagcgtgaagatgacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgatga |
553 |
Q |
| |
|
||| | | | ||||| | | | |||||| |||||| |||||||| ||||||||||| || || |||| ||||||||||| |
|
|
| T |
6313883 |
tataaatcttgcttcggcacaaatcagcgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatga |
6313963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 75 - 553
Target Start/End: Original strand, 5598190 - 5598672
Alignment:
| Q |
75 |
ttgataaaatataattttaatgtatgcaaagactaaaaa-cctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttcta |
173 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||| |||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||| | |
|
|
| T |
5598190 |
ttgacaaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttcca |
5598289 |
T |
|
| Q |
174 |
attttgcatcatcttatcatcttggttctcttgct---tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaaca |
270 |
Q |
| |
|
|||||| |||||||||||||| | ||| |||||| ||||||| || | ||| ||| ||| |||||| || |||||||| ||||||||||||||| |
|
|
| T |
5598290 |
attttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaaca |
5598389 |
T |
|
| Q |
271 |
tggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcat |
370 |
Q |
| |
|
||||| || |||||||| ||| |||||||||| || ||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||||||| |||| |
|
|
| T |
5598390 |
tggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcat |
5598489 |
T |
|
| Q |
371 |
agttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgta |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5598490 |
agttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctataatctatgta |
5598589 |
T |
|
| Q |
471 |
ggtatgtaaataggttcgggaaagagcagcgtgaagatgacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgatga |
553 |
Q |
| |
|
||||| | ||||| | || | ||||||| || |||||| |||||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
5598590 |
ggtattgatataggattggcatagagcagtgtaaagatggcttgtgaaaccagcgcgagtgtcatcgcctctaaagctgatga |
5598672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 75 - 553
Target Start/End: Complemental strand, 5637085 - 5636603
Alignment:
| Q |
75 |
ttgataaaatataattttaatgtatgcaaagactaaaaa-cctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttcta |
173 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||| |||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||| | |
|
|
| T |
5637085 |
ttgacaaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttcca |
5636986 |
T |
|
| Q |
174 |
attttgcatcatcttatcatcttggttctcttgct---tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaaca |
270 |
Q |
| |
|
|||||| |||||||||||||| | ||| |||||| ||||||| || | ||| ||| ||| |||||| || |||||||| ||||||||||||||| |
|
|
| T |
5636985 |
attttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaaca |
5636886 |
T |
|
| Q |
271 |
tggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcat |
370 |
Q |
| |
|
||||| || |||||||| ||| |||||||||| || ||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||||||| |||| |
|
|
| T |
5636885 |
tggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcat |
5636786 |
T |
|
| Q |
371 |
agttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgta |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5636785 |
agttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctataatctatgta |
5636686 |
T |
|
| Q |
471 |
ggtatgtaaataggttcgggaaagagcagcgtgaagatgacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgatga |
553 |
Q |
| |
|
||||| | ||||| | || | ||||||| || |||||| |||||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
5636685 |
ggtattgatataggattggcatagagcagtgtaaagatggcttgtgaaaccagcgcgagtgtcatcgcctctaaagctgatga |
5636603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 81 - 553
Target Start/End: Complemental strand, 5624883 - 5624412
Alignment:
| Q |
81 |
aaatataattttaatgtatgcaaagacta--aaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaatttt |
178 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||| | | | |||||||||||||||||||||||||||||||||||||| | ||| | |||| |
|
|
| T |
5624883 |
aaatataattttaataaatgcaaagattagaaaaacctgtttttggctaaatgaaaaccagacaaattagcagcttgaaaaagagcagtattccattttt |
5624784 |
T |
|
| Q |
179 |
gcatcatcttatcatcttggttctcttgct---tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggta |
275 |
Q |
| |
|
||||| |||| | ||| |||||| ||||||| || | ||| |||||||||| || ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
5624783 |
gcatc------tcatggtcgttgccttgctccttgtgtttagccagagcagtgccataacttccggtctgtttccgcacttgtgaagggtcaacatggta |
5624690 |
T |
|
| Q |
276 |
gaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttc |
375 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||||||||||||| |||||||||| || ||| ||||| ||||||||| ||||||| || || |||||| |
|
|
| T |
5624689 |
gaacacaggaataacaacaacattgtcatcttcatttttgttattacactccattatttgaacgagttcgttcaaacaccatgttgatgacgcgtagttc |
5624590 |
T |
|
| Q |
376 |
tctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaggtat |
475 |
Q |
| |
|
|| |||||||| |||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | | |||||||||||||| |
|
|
| T |
5624589 |
tccgagaacaccacaagatacagagtggattgtttgattgctttcacaagttctgcccaaacttcatctcctttctcgatctttttgtctatgtaggtat |
5624490 |
T |
|
| Q |
476 |
gtaaataggttcgggaaagagcagcgtgaagatgacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgatga |
553 |
Q |
| |
|
| | |||| ||||| | | |||||||| |||||| |||||||| ||||||||||| || ||||||| ||||||||||| |
|
|
| T |
5624489 |
ggatatagtttcggcacaaagcagcgtaaagatggcttgtgaatccagcgcgagtgtcgtcgcctctaaagctgatga |
5624412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 209 - 551
Target Start/End: Complemental strand, 13164591 - 13164249
Alignment:
| Q |
209 |
tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttc |
308 |
Q |
| |
|
||||||| || || ||| |||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || | ||| |
|
|
| T |
13164591 |
tgtgttttgccaaagcagtgccgtaactgccagtctgcttccgaacatgtgaagggtcaacatggtagaacacaggaataacaacaacgttatcattttc |
13164492 |
T |
|
| Q |
309 |
atttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgt |
408 |
Q |
| |
|
||| ||||| | |||||||||| || ||| ||||| ||||||||| |||||||| | || ||||||||||||||||| |||||||| ||||| |||| |
|
|
| T |
13164491 |
attgttgttgctacactccattatttgaactagttcgttcaaacaccatgttgaaaatgcgtagttctctgagaacacgacaagaaaaagagtggattca |
13164392 |
T |
|
| Q |
409 |
ttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaggtatgtaaataggttcgggaaagagcagcgtgaagat |
508 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| || | | ||||| | | ||||||||||||| |
|
|
| T |
13164391 |
ttgattgctttctgaagttctccccaaacttcatctcctttttcgatcctgtagtctatgtatgtatgaaagttgcttcggcacaatgcagcgtgaagat |
13164292 |
T |
|
| Q |
509 |
gacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgat |
551 |
Q |
| |
|
| |||||||||||||| || || || || |||||||||||||| |
|
|
| T |
13164291 |
ggcttgtgaaaccagcccgtgtgtcgtcacctcgaaagctgat |
13164249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 109 - 553
Target Start/End: Complemental strand, 5547838 - 5547391
Alignment:
| Q |
109 |
aaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttctcttgct |
208 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| | |||||||| | ||| | ||||||||| |||| | ||| |||||| |
|
|
| T |
5547838 |
aaaaacctgtatgtggttgaatgaaaaccagacaaattagcagcttcagaaagagcagtattccatttttgcatc------tcatggtcgttgccttgct |
5547745 |
T |
|
| Q |
209 |
t---gtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtc |
305 |
Q |
| |
|
| |||||| || || ||| ||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
5547744 |
tcttgtgtttagccaaggcagtgccataactcccagtttgcttcctcacgtgtgaagggtcaacatggtagaacacaggaataacaacaacgttgtcatc |
5547645 |
T |
|
| Q |
306 |
ttcatttttgttacgg------cactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacaga |
399 |
Q |
| |
|
||||||||||||| | ||||||||| ||||| ||||| ||||||||| |||||||||| || ||||||| |||||||| |||||||||| | |
|
|
| T |
5547644 |
ttcatttttgttaatgtcgaataactccattatctcaaccagttcgttcaaacaccatgttgaagatgcgtagttcttcgagaacacgacaagaaacaaa |
5547545 |
T |
|
| Q |
400 |
gttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaggtatgtaaataggttcgggaaagagcag |
499 |
Q |
| |
|
|| |||||||| ||||| ||| ||||||||| |||||||| ||||||||| || ||| | ||| ||||||||||| | || ||||| | ||| |
|
|
| T |
5547544 |
gtggattgtttcattgccttcacaagttctgcccaaacttgatctcctttttcaatcaagttgtcaatgtaggtatggatatgttttcggcgcaaagctt |
5547445 |
T |
|
| Q |
500 |
cgtgaagatgacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgatga |
553 |
Q |
| |
|
| |||||| ||| |||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
5547444 |
tataaagatggcttatgaaaccaacgcgtgtatcttcgcctcgaaagctgatga |
5547391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 108 - 553
Target Start/End: Complemental strand, 32632976 - 32632540
Alignment:
| Q |
108 |
taaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttctcttgc |
207 |
Q |
| |
|
|||| |||||||||| | ||||||||||| || ||||| || ||||||||||||||||||||| |||||||||||||||||| ||| | | | | |
|
|
| T |
32632976 |
taaatacctgtatgtggtagaatgaaaaccggataaattggctgcttgaaaaagagcattcttccaattttgcatcatcttatgatcacagccttgcttc |
32632877 |
T |
|
| Q |
208 |
ttgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtctt |
307 |
Q |
| |
|
|||||||| || |||||| |||| ||||| || ||||| |||||||| | || ||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
32632876 |
ttgtgttttgccaacgcagtgccgtaacttccagtctgtttccgcacgcgggaggggtcaatatggtaaaacacaggaataacagcaacgttgtc----- |
32632782 |
T |
|
| Q |
308 |
catttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattg |
407 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||| ||||||||| |||||||||| |||||||||| |||||||| || | ||| | ||| ||||| |
|
|
| T |
32632781 |
----tttgttactacactccattatttcaacgagttcgttcaaacaccatgttgaagacgcatagttcttcgagaacactaccaaaaagatagtggattg |
32632686 |
T |
|
| Q |
408 |
tttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaggtatgtaaataggttcgggaaagagcagcgtgaaga |
507 |
Q |
| |
|
||||||||||||| |||||||| |||||| | |||||||| | |||||| ||||||||||| ||||| || | | || | | | || ||| |||| |
|
|
| T |
32632685 |
tttgattgctttcgtaagttctgcccaaacatggtctcctttttggatcctgtagtctatgtatgtatgaaacttgctttgtaagaaagtttcgtaaaga |
32632586 |
T |
|
| Q |
508 |
tgacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgatga |
553 |
Q |
| |
|
|| |||||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
32632585 |
tggcttgtgaatccagcgcgagtgtcttcgcctctaaagctgatga |
32632540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 232 - 473
Target Start/End: Original strand, 12190381 - 12190619
Alignment:
| Q |
232 |
taactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccatta |
331 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || | | |||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||| |
|
|
| T |
12190381 |
taactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcatta |
12190477 |
T |
|
| Q |
332 |
gttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctgg |
431 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| | ||| | || ||| ||| |||||| | || |||||| |
|
|
| T |
12190478 |
tttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaaccaaaaataaagcagatgctttaattgctctttctagttcttc |
12190577 |
T |
|
| Q |
432 |
ccaaacttcatctcctttctcgatcctatagtctatgtaggt |
473 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
12190578 |
ccaaacctcttctcctttttcgattctatagtctatgtaggt |
12190619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 232 - 473
Target Start/End: Original strand, 12434809 - 12435047
Alignment:
| Q |
232 |
taactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccatta |
331 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || | | |||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||| |
|
|
| T |
12434809 |
taactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcatta |
12434905 |
T |
|
| Q |
332 |
gttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctgg |
431 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| | ||| | || ||| ||| |||||| | || |||||| |
|
|
| T |
12434906 |
tttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaaccaaaaataaagcagatgctttaattgctctttctagttcttc |
12435005 |
T |
|
| Q |
432 |
ccaaacttcatctcctttctcgatcctatagtctatgtaggt |
473 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
12435006 |
ccaaacctcttctcctttttcgattctatagtctatgtaggt |
12435047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 232 - 473
Target Start/End: Original strand, 12178686 - 12178924
Alignment:
| Q |
232 |
taactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccatta |
331 |
Q |
| |
|
||||| ||||||||||| || |||||||||| || | | |||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||| |
|
|
| T |
12178686 |
taacttcctgtctgctttcggacatgtgaagcttctatacggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcatta |
12178782 |
T |
|
| Q |
332 |
gttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctgg |
431 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| | ||| | || ||| ||| |||||||| || |||||| |
|
|
| T |
12178783 |
tttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaaccaaaaataaagcggatgctttaattgctttttctagttcttc |
12178882 |
T |
|
| Q |
432 |
ccaaacttcatctcctttctcgatcctatagtctatgtaggt |
473 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
12178883 |
ccaaacctcttctcctttttcgattctatagtctatgtaggt |
12178924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 232 - 473
Target Start/End: Original strand, 12423114 - 12423352
Alignment:
| Q |
232 |
taactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactccatta |
331 |
Q |
| |
|
||||| ||||||||||| || |||||||||| || | | |||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||| |
|
|
| T |
12423114 |
taacttcctgtctgctttcggacatgtgaagcttctatacggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt---gcacttcatta |
12423210 |
T |
|
| Q |
332 |
gttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagttctgg |
431 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| | ||| | || ||| ||| |||||||| || |||||| |
|
|
| T |
12423211 |
tttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaaccaaaaataaagcggatgctttaattgctttttctagttcttc |
12423310 |
T |
|
| Q |
432 |
ccaaacttcatctcctttctcgatcctatagtctatgtaggt |
473 |
Q |
| |
|
|||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
12423311 |
ccaaacctcttctcctttttcgattctatagtctatgtaggt |
12423352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 207 - 449
Target Start/End: Complemental strand, 5562557 - 5562327
Alignment:
| Q |
207 |
cttgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtct |
306 |
Q |
| |
|
||||||||| || | |||| |||| ||||||||||| || ||||| |||| ||||||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
5562557 |
cttgtgttttgccagcgcagtgccgtaactccctgtgtgtttccgaacatcagaagggtcaacatggtagaacacaggattaacaac----ttga----- |
5562467 |
T |
|
| Q |
307 |
tcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgatt |
406 |
Q |
| |
|
|||||||||| |||| ||||||| || ||| ||||||||||||||| |||||||||| || |||||||| |||||||| |||||||||| ||| |||| |
|
|
| T |
5562466 |
tcatttttgt---ggcattccattatttgaacgagttcattcaaacaccatgttgaagacgcgtagttctccgagaacacgacaagaaacaaagtggatt |
5562370 |
T |
|
| Q |
407 |
gtttgattgctttctcaagttctggccaaacttcatctccttt |
449 |
Q |
| |
|
|||| ||||| ||| ||||||||| |||||||||||||||||| |
|
|
| T |
5562369 |
gtttcattgccttcacaagttctgcccaaacttcatctccttt |
5562327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 207 - 473
Target Start/End: Complemental strand, 5573003 - 5572753
Alignment:
| Q |
207 |
cttgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtct |
306 |
Q |
| |
|
||||||||| || || ||| |||| |||||||| ||||||||||| || |||||||||||||||||||| | ||||||||| |||| ||||| | | |
|
|
| T |
5573003 |
cttgtgttttgccaaagcagtgccgtaactccccgtctgcttccggacgtgtgaagggtcaacatggta-----cgggaataacaacaacattgtctttt |
5572909 |
T |
|
| Q |
307 |
tcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgatt |
406 |
Q |
| |
|
|||||||||| || | | ||||| ||||||||||| ||||||||| |||||||| ||||| |||||||| |||||||||| ||| || | |
|
|
| T |
5572908 |
tcatttttgtgac---atttcattatttcaacaagtttgttcaaacaccatgttgaac--------ttctccgagaacacgacaagaaacaaagtggaat |
5572820 |
T |
|
| Q |
407 |
gtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaggt |
473 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
5572819 |
ccttgattgctttcaagagttctgtccaaacttcatctcctttttggatcctatagtctatgtaggt |
5572753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 13164678 - 13164598
Alignment:
| Q |
110 |
aaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttat |
190 |
Q |
| |
|
||||||||||||| | ||||| || ||||| ||||||| |||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
13164678 |
aaaacctgtatgtggtagaatggaatccagataaattagatgcttcgaaaagagcattcttccaattttgcaacatcttat |
13164598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 14403627 - 14403587
Alignment:
| Q |
76 |
tgataaaatataattttaatgtatgcaaagactaaaaacct |
116 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
14403627 |
tgataaaatttatttttaatgtatgcaaagactaaaaacct |
14403587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 102 - 553
Target Start/End: Original strand, 15279 - 15733
Alignment:
| Q |
102 |
aaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttc |
201 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||| |
|
|
| T |
15279 |
aaagactaaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttg |
15378 |
T |
|
| Q |
202 |
tcttgct---tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgt |
298 |
Q |
| |
|
||||||| | ||||| | |||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
15379 |
tcttgctccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgt |
15478 |
T |
|
| Q |
299 |
tgtcgtcttcatttttgttacggcactccattagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacag |
398 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||||| ||||| ||||||||| |||||||||| || |||||||| ||||||||||||||||| || |
|
|
| T |
15479 |
tgtcatcttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaag |
15578 |
T |
|
| Q |
399 |
agttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaggtatgtaaataggttcgggaaagagca |
498 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
15579 |
agtggattgtttgattgctttaacaagttctgaccaaacatcatctcctttctcgatcttgtagtctatgtaggtatgtaaatgggttcggcaaagagca |
15678 |
T |
|
| Q |
499 |
gcgtgaagatgacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgatga |
553 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
15679 |
gcgtgaagatggcttgtgaaacaagttcgagtatcttcgcctcgaaagctgatga |
15733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 15226 - 15266
Alignment:
| Q |
76 |
tgataaaatataattttaatgtatgcaaagactaaaaacct |
116 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
15226 |
tgataaaatttatttttaatgtatgcaaagactaaaaacct |
15266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 228 - 428
Target Start/End: Original strand, 19495914 - 19496108
Alignment:
| Q |
228 |
gccataactccctgtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaataacaccaacgttgtcgtcttcatttttgttacggcactcc |
327 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||||| |||| | ||||||||||||||| |||| |||| ||||| | ||||| || | |||| | |
|
|
| T |
19495914 |
gccataactcccagtctgcttccgaacatatgaaggttcaatacggtagaacacaggaagaacaacaac-ttgtc----tactttttctt-ctacacttc |
19496007 |
T |
|
| Q |
328 |
attagttcaacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttctcaagtt |
427 |
Q |
| |
|
|||| |||||||||||||| ||||||| | | ||| || ||||||||||||||||| || ||||| |||||||||| || ||||||||| |||||| |
|
|
| T |
19496008 |
attatttcaacaagttcatccaaacaccaactggaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttcacaagtt |
19496107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 16334795 - 16334755
Alignment:
| Q |
340 |
agttcattcaaacacaatgttgaagaagcatagttctctga |
380 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
16334795 |
agttcattcaaacaccattttgaagaagcatagttttctga |
16334755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 17661045 - 17660989
Alignment:
| Q |
335 |
caacaagttcattcaaacacaatgttgaagaagcatagttctctgagaacacaacaa |
391 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||| | ||||| ||||||| |
|
|
| T |
17661045 |
caacaagttcattcaaacaaaaagttgaggaagcatagttgttagagaaaacaacaa |
17660989 |
T |
|
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