View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4186_low_4 (Length: 517)

Name: NF4186_low_4
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4186_low_4
NF4186_low_4
[»] chr3 (13 HSPs)
chr3 (8-301)||(39688203-39688493)
chr3 (371-492)||(39688563-39688684)
chr3 (164-282)||(34440285-34440403)
chr3 (205-282)||(53630130-53630207)
chr3 (23-117)||(2811271-2811365)
chr3 (23-117)||(16256186-16256280)
chr3 (191-280)||(2811434-2811523)
chr3 (191-280)||(41071219-41071308)
chr3 (38-113)||(13330435-13330510)
chr3 (20-99)||(53347703-53347782)
chr3 (191-280)||(7627146-7627235)
chr3 (17-85)||(34440142-34440210)
chr3 (39-117)||(47829719-47829797)
[»] chr4 (22 HSPs)
chr4 (19-301)||(51718513-51718793)
chr4 (8-282)||(634028-634298)
chr4 (371-512)||(51718302-51718443)
chr4 (8-282)||(40451332-40451598)
chr4 (164-282)||(32309934-32310052)
chr4 (158-282)||(850209-850333)
chr4 (165-277)||(42562773-42562885)
chr4 (381-481)||(40923560-40923660)
chr4 (164-240)||(39463416-39463492)
chr4 (384-481)||(634400-634498)
chr4 (19-113)||(38650047-38650142)
chr4 (381-494)||(40451120-40451233)
chr4 (17-85)||(850071-850139)
chr4 (380-486)||(32310151-32310257)
chr4 (380-441)||(850430-850491)
chr4 (23-117)||(13505252-13505346)
chr4 (213-299)||(38649865-38649951)
chr4 (191-280)||(13505415-13505504)
chr4 (17-117)||(42562629-42562729)
chr4 (17-85)||(39463568-39463636)
chr4 (380-441)||(21058507-21058568)
chr4 (17-85)||(32309790-32309858)
[»] chr1 (26 HSPs)
chr1 (8-300)||(49033135-49033425)
chr1 (19-301)||(28443287-28443562)
chr1 (371-512)||(49033496-49033637)
chr1 (371-492)||(28443095-28443216)
chr1 (164-299)||(48997001-48997136)
chr1 (164-282)||(50907584-50907702)
chr1 (164-273)||(33298776-33298885)
chr1 (168-280)||(43784936-43785048)
chr1 (385-486)||(24965806-24965907)
chr1 (164-282)||(28540940-28541047)
chr1 (39-117)||(24965461-24965539)
chr1 (371-441)||(48996857-48996927)
chr1 (17-85)||(28540795-28540863)
chr1 (23-85)||(23348832-23348893)
chr1 (371-441)||(44488270-44488340)
chr1 (380-441)||(28541147-28541208)
chr1 (47-115)||(20007278-20007346)
chr1 (17-85)||(33298632-33298700)
chr1 (164-240)||(44488460-44488536)
chr1 (17-85)||(50907778-50907846)
chr1 (247-282)||(44488429-44488464)
chr1 (380-441)||(50907424-50907485)
chr1 (168-240)||(37313431-37313503)
chr1 (17-85)||(44488612-44488680)
chr1 (213-277)||(48955643-48955707)
chr1 (17-85)||(48997212-48997280)
[»] chr2 (16 HSPs)
chr2 (165-301)||(939904-940040)
chr2 (371-512)||(939693-939834)
chr2 (8-117)||(940072-940181)
chr2 (168-280)||(18206685-18206797)
chr2 (23-117)||(31118953-31119047)
chr2 (381-481)||(25678479-25678579)
chr2 (164-278)||(28033598-28033712)
chr2 (381-481)||(24928865-24928965)
chr2 (23-85)||(15424146-15424208)
chr2 (380-441)||(11815698-11815759)
chr2 (191-277)||(15424297-15424383)
chr2 (371-486)||(31119299-31119413)
chr2 (38-85)||(20931249-20931296)
chr2 (168-280)||(27333032-27333141)
chr2 (23-116)||(11807619-11807712)
chr2 (168-229)||(20931106-20931167)
[»] chr7 (26 HSPs)
chr7 (14-282)||(41799438-41799702)
chr7 (19-284)||(13553111-13553375)
chr7 (163-282)||(8525106-8525225)
chr7 (164-282)||(38455409-38455527)
chr7 (168-280)||(21065904-21066016)
chr7 (23-88)||(8524977-8525042)
chr7 (372-460)||(13552936-13553024)
chr7 (23-117)||(22518006-22518100)
chr7 (23-115)||(13608954-13609046)
chr7 (381-464)||(41799801-41799884)
chr7 (379-488)||(8525322-8525431)
chr7 (23-115)||(15826101-15826193)
chr7 (371-445)||(8231734-8231807)
chr7 (371-441)||(38455249-38455319)
chr7 (168-280)||(12625296-12625408)
chr7 (211-279)||(16728672-16728740)
chr7 (211-279)||(17705744-17705812)
chr7 (205-279)||(17715723-17715797)
chr7 (23-85)||(21065762-21065824)
chr7 (201-244)||(16728631-16728674)
chr7 (201-244)||(17705703-17705746)
chr7 (220-279)||(29033520-29033579)
chr7 (19-68)||(6715705-6715754)
chr7 (249-301)||(8229975-8230027)
chr7 (23-83)||(16728493-16728553)
chr7 (23-83)||(17705565-17705625)
[»] chr8 (20 HSPs)
chr8 (371-512)||(9384737-9384878)
chr8 (182-294)||(9384956-9385068)
chr8 (164-282)||(14094929-14095047)
chr8 (164-282)||(10529264-10529382)
chr8 (202-282)||(37229972-37230052)
chr8 (456-512)||(23558852-23558908)
chr8 (164-244)||(37229896-37229976)
chr8 (23-85)||(9238590-9238652)
chr8 (23-113)||(22721600-22721690)
chr8 (371-494)||(10529048-10529171)
chr8 (23-115)||(28838259-28838351)
chr8 (371-446)||(37230141-37230216)
chr8 (23-117)||(16995813-16995907)
chr8 (380-441)||(14094768-14094829)
chr8 (371-435)||(22721282-22721346)
chr8 (21-85)||(37229755-37229819)
chr8 (213-280)||(16995655-16995722)
chr8 (380-441)||(20520600-20520661)
chr8 (17-85)||(10529458-10529526)
chr8 (17-85)||(14095123-14095191)
[»] chr5 (16 HSPs)
chr5 (142-301)||(6702753-6702901)
chr5 (371-492)||(6702562-6702683)
chr5 (19-104)||(6702916-6703001)
chr5 (164-282)||(2740906-2741024)
chr5 (164-282)||(13272061-13272179)
chr5 (371-441)||(13271902-13271972)
chr5 (372-444)||(22553127-22553199)
chr5 (38-117)||(22552796-22552875)
chr5 (191-298)||(24211179-24211286)
chr5 (23-83)||(24211047-24211107)
chr5 (23-113)||(1817799-1817889)
chr5 (371-441)||(2740745-2740815)
chr5 (191-280)||(8431209-8431298)
chr5 (17-85)||(2741100-2741168)
chr5 (17-85)||(13272255-13272323)
chr5 (162-190)||(36933128-36933156)
[»] scaffold0262 (1 HSPs)
scaffold0262 (19-282)||(9689-9948)
[»] scaffold0408 (2 HSPs)
scaffold0408 (164-282)||(5271-5389)
scaffold0408 (17-85)||(5465-5533)
[»] scaffold1212 (3 HSPs)
scaffold1212 (164-282)||(1374-1492)
scaffold1212 (17-85)||(1230-1298)
scaffold1212 (380-441)||(1590-1651)
[»] chr6 (12 HSPs)
chr6 (167-282)||(35007094-35007209)
chr6 (142-301)||(24122472-24122630)
chr6 (373-461)||(24122311-24122399)
chr6 (164-282)||(6287900-6288007)
chr6 (191-278)||(31020815-31020902)
chr6 (168-282)||(18790840-18790954)
chr6 (450-512)||(25400935-25400997)
chr6 (38-113)||(17754980-17755055)
chr6 (201-280)||(19222657-19222736)
chr6 (371-451)||(19222486-19222566)
chr6 (380-438)||(6288106-6288164)
chr6 (17-85)||(35012465-35012533)
[»] scaffold0010 (3 HSPs)
scaffold0010 (24-113)||(34212-34301)
scaffold0010 (371-441)||(34555-34625)
scaffold0010 (201-284)||(34384-34468)
[»] scaffold0046 (2 HSPs)
scaffold0046 (385-486)||(75127-75228)
scaffold0046 (39-117)||(74782-74860)
[»] scaffold0695 (1 HSPs)
scaffold0695 (380-441)||(1620-1681)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 39688203 - 39688493
Alignment:
Q  8 tataatcaacaacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39688203 tataatcaacaacaatgtcatttgaatccataaactaccacattgcagtcaaattaactatcatcaacattaacaaacatagctctaactaattacatca 39688302  T
Q  108 ttaacaatccnnnnnnnnnnnnnnnnnnnntcatttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaa 207  Q
    ||||||||||                    ||||| || |||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  39688303 ttaacaatccaaaaaaacaaaataaata--tcatt-gagacatttcaccgaacacgtagtgtgcatttttcaaacaactgtgtaatctgacattttctaa 39688399  T
Q  208 accctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 301  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  39688400 accctaaactaccacattgtaccctaaacaacatctaaacaacaattcctaagttaaatcatcactagcaatcataatctttaacatccaagac 39688493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 371 - 492
Target Start/End: Original strand, 39688563 - 39688684
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 470  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| ||| |||||    
T  39688563 gaagtagtataacaatcacttacttgatattgtggacgaaatttggtttgaatggcgcaagaatggtgaaattcggatttgggggtgaaattttcgtttt 39688662  T
Q  471 ttgaaaagttgcaaaatggagg 492  Q
    ||||||||||| ||||||||||    
T  39688663 ttgaaaagttgaaaaatggagg 39688684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 34440285 - 34440403
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||| ||||||||    
T  34440285 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaatttctaagtta 34440384  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  34440385 attcatcactaacaatcat 34440403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 53630207 - 53630130
Alignment:
Q  205 taaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcat 282  Q
    |||||||||||||| |||||||||| ||||||||||||||  ||||||||||||| |||| |||||||||||||||||    
T  53630207 taaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcctaaattaattcatcactaacaatcat 53630130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 2811271 - 2811365
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    |||||||| ||||||||||||| ||||||||| ||||| ||||||| ||||||  ||||||||  |  ||||||||||| |||| ||||||||||    
T  2811271 tgtcatttcaatccataaactaacacattgcagtcaaactaactataatcaaccataacaaaccaatttctaactaatttcatctttaacaatcc 2811365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 16256186 - 16256280
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    |||||||| |||| ||||||| |||||||||| ||||| ||||||| ||||||| ||||||||  |  ||||||||||| |||| ||||||||||    
T  16256186 tgtcatttcaatctataaactgccacattgcagtcaaactaactataatcaacactaacaaaccaatttctaactaatttcatcattaacaatcc 16256280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 2811434 - 2811523
Alignment:
Q  191 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 280  Q
    ||||| ||| ||| |||||||||||||| ||||||| |  ||||||||||||||  | ||||||||||| |||| |||||||||||||||    
T  2811434 aatctaacaatttttaaaccctaaactaccacattgcattctaaacaacatctaaactacaattcctaacttaattcatcactaacaatc 2811523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 41071219 - 41071308
Alignment:
Q  191 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 280  Q
    ||||| ||| |||||||||||||||||| ||||||| || ||||| ||||||||  | ||||||| ||| |||| |||||||||||||||    
T  41071219 aatctaacaatttctaaaccctaaactaccacattgcactctaaataacatctaaactacaattcttaacttaattcatcactaacaatc 41071308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 13330510 - 13330435
Alignment:
Q  38 taaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaaca 113  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||||||  |  ||||||||||| |||| ||||||    
T  13330510 taaactaccacattgcagtcaaactaactataatcaacattaacaaaccaatttctaactaatttcatcattaaca 13330435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 53347703 - 53347782
Alignment:
Q  20 caatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaa 99  Q
    ||||||||||| ||||| |||| ||||||||| || ||||| ||||||| ||| |||||||||||||||  |||||||||    
T  53347703 caatgtcatttcaatccgtaaaataccacattacagtcaaactaactataatcgacattaacaaacatatttctaactaa 53347782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 7627235 - 7627146
Alignment:
Q  191 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 280  Q
    ||||| ||| ||||||||||||||| |  |||| || |  ||||||||||||||  | ||||||||||| |||| |||||||||||||||    
T  7627235 aatctaacaatttctaaaccctaaatttccacaatgcattctaaacaacatctaaactacaattcctaacttaattcatcactaacaatc 7627146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 34440142 - 34440210
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||   | ||| ||||| ||||||||||    
T  34440142 caacaatgtcatttcaatccgtaaactaccacattgcagtcaaacatattataatcaaaattaacaaac 34440210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 47829719 - 47829797
Alignment:
Q  39 aaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    ||||||||| |||||| | ||| ||||||| ||||||||||||||||  |  | ||||||||| |||| ||||||||||    
T  47829719 aaactaccatattgcagttaaactaactataatcaacattaacaaaccaatttttaactaatttcatcattaacaatcc 47829797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 51718793 - 51718513
Alignment:
Q  19 acaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatccn 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||     
T  51718793 acaatgtcatttgaatccataaactaccacattgcagtcaaattaactatcatcaacattaacaaacatagctctaactaattacttcattaacaatcca 51718694  T
Q  119 nnnnnnnnnnnnnnnnnnntcatttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaacta 218  Q
                       ||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51718693 aaaaaataaaaaaaaata-tcatt-gagacatttcaccgaacacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaacta 51718596  T
Q  219 tcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 301  Q
     |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51718595 ccacattgtaccctaaacaacatctaaacaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcgagac 51718513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 634028 - 634298
Alignment:
Q  8 tataatcaacaacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatcc 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||     
T  634028 tataatcaacaacaatgtcattggaatccataaactaccacattgcagtcaaactaactatcatcaacattaacaaacatagctctaactaattatatca 634127  T
Q  108 ttaacaatccnnnnnnnnnnnnnnnnnnnntcatttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaa 207  Q
    ||||||||||                    ||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  634128 ttaacaatccaaaaaacaaaataaata---tcatt-gagacatttcaccgaacacgtagtgtgcatttttcaaacaactatgtaatctaacattttctaa 634223  T
Q  208 accctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcat 282  Q
    ||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||  |  ||||||||||||||    
T  634224 accctaaactaccacattgtaccttaaacaacatctaaacaacaattcctaagttatttggtcactaacaatcat 634298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 371 - 512
Target Start/End: Complemental strand, 51718443 - 51718302
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 470  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||  ||||| ||||||||||| |||||    
T  51718443 gaagtagtataataatcacttacttgatattgtggacgaattgtggtttgaatggcgcaagaatggtgaaattcggatttgaaggtgaaaatttcgtttt 51718344  T
Q  471 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgct 512  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  51718343 ttgaaaagttgaaaaatggaggaatggaggttctgtgttgct 51718302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 40451598 - 40451332
Alignment:
Q  8 tataatcaacaacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatcc 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    || |||||||||||||||||     
T  40451598 tataatcaacaacaatgtcatttgaattcataaactaccacattgcagtcaaattaactatcatcaacattaaca----taactctaactaattacatca 40451503  T
Q  108 ttaacaatccnnnnnnnnnnnnnnnnnnnntcatttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaa 207  Q
    ||||||||||                    ||||| || |||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||| |||    
T  40451502 ttaacaatccaaaaaacaaaataaata---tcatt-gagacatttcaccgaacacgtagtgtgtatttttcaaacaactatgtaatctaacattttataa 40451407  T
Q  208 accctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcat 282  Q
    |||||| |||| ||||||||||| ||| |||||||||  |||||||||||||||||  |  ||||||||||||||    
T  40451406 accctatactaccacattgtaccgtaagcaacatctaaacaacaattcctaagttatttggtcactaacaatcat 40451332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 32309934 - 32310052
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| ||||||| |||||| |||||||||| ||||||||| ||||  |||||||||||||||||    
T  32309934 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaacccgaaactaccacattgtactctaaacaacttctaaacaacaattcctaagtta 32310033  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  32310034 attcatcactaacaatcat 32310052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 850209 - 850333
Alignment:
Q  158 aatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcct 257  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||  ||| |||||||||||||| | |||||||| ||||||||| ||||  |||||||||||    
T  850209 aatacatagtgtgcaattttcaaacaactaggtaatctaacgatttgtaaaccctaaactaccgcattgtactctaaacaacttctaaacaacaattcct 850308  T
Q  258 aagttaaatcatcactaacaatcat 282  Q
    ||||||| |||| ||||||||||||    
T  850309 aagttaattcattactaacaatcat 850333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 42562773 - 42562885
Alignment:
Q  165 agtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaa 264  Q
    |||||||| |||| ||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||||||||  |||||||| |||||||||    
T  42562773 agtgtgcaatttttaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacatctaaacaacaatttctaagttaa 42562872  T
Q  265 atcatcactaaca 277  Q
     ||||||||||||    
T  42562873 ttcatcactaaca 42562885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 481
Target Start/End: Complemental strand, 40923660 - 40923560
Alignment:
Q  381 aataatcacttacttgatattgtggacggaatttggttt-gaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagt 479  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |||| || |  |||| |||||||| ||| |||||| |||||||    
T  40923660 aataatcacttacttgatagtgtggacg-aatttggttttgaatggcgcaagaatgatgaattttggatttgggggtgaaattttcgtttttggaaaagt 40923562  T
Q  480 tg 481  Q
    ||    
T  40923561 tg 40923560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 39463492 - 39463416
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaaca 240  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| | |||||||||||| |||||||||| ||||||||||    
T  39463492 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtgaaccctaaactaccacattgtactctaaacaaca 39463416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 634400 - 634498
Alignment:
Q  384 aatcacttacttgatattgtggacggaatttgg-tttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttttt-gaaaagttg 481  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||| ||||  |||| |||||||| ||| ||||||| |||||||||    
T  634400 aatcacttacttgatattgtggac-gaatttggctttgaatggctcaagaatgatgaatttcggatttgggggtgaaattttcgttttttggaaaagttg 634498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 38650142 - 38650047
Alignment:
Q  19 acaatgtcatttgaatccataaa-ctaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaaca 113  Q
    |||||||||||| ||||  |||| ||||||||||||| ||||| ||||||| |||||||||||||||||||  || |||||||| |||| ||||||    
T  38650142 acaatgtcatttcaatctgtaaaactaccacattgcagtcaaactaactataatcaacattaacaaacatatttcaaactaatttcatcattaaca 38650047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 494
Target Start/End: Complemental strand, 40451233 - 40451120
Alignment:
Q  381 aataatcacttacttgatattgtggacggaatttgg-tttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagt 479  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||   |||| ||||| |||| ||| |||| ||| |||||| |||||||    
T  40451233 aataatcacttacttgatattgtggac-gaatttggctttgaatggcacaagaacaatgaatttcgaatttgggggcgaaattttcgtttttggaaaagt 40451135  T
Q  480 tgcaaaatggaggaa 494  Q
    ||  |||||| ||||    
T  40451134 tgggaaatgggggaa 40451120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 850071 - 850139
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||  | ||| ||||| ||||||||||    
T  850071 caacaatgtcatttcaatccataaactaccacattgcagtcaaatatattataatcaaaattaacaaac 850139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 486
Target Start/End: Original strand, 32310151 - 32310257
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcg-agtttgagggtgaaaattttgttttttgaaaag 478  Q
    |||| |||||||||||||||||||||  | |||| | ||||||||||||||||||||||||| ||| | || ||||| ||||||||||| ||| || |||    
T  32310151 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaaatcgcacttggaggg-gaaaattttgtgtttggagaag 32310249  T
Q  479 ttgcaaaa 486  Q
    ||| ||||    
T  32310250 ttggaaaa 32310257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 850430 - 850491
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  850430 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 850491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 13505252 - 13505346
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    |||||||| | ||| |||||||||||||||||  |||| ||||||| ||||||| |||| |||  |  ||||||||||| |||| ||||||||||    
T  13505252 tgtcatttcagtccgtaaactaccacattgcagacaaactaactataatcaacaataacgaaccaatttctaactaatttcatcattaacaatcc 13505346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 38649951 - 38649865
Alignment:
Q  213 aaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaag 299  Q
    |||||| ||||||  || ||||||||||||||  | ||||||||||| |||| ||||||||||||||| ||||   |||||||||||    
T  38649951 aaactaccacatttcactctaaacaacatctaaactacaattcctaacttaattcatcactaacaatcttaataactaacatgcaag 38649865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 13505415 - 13505504
Alignment:
Q  191 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 280  Q
    ||||| ||| |||||||||||||||||| ||||||| |  || |||||||||||  | ||| ||| ||| |||| |||||||||||||||    
T  13505415 aatctaacaatttctaaaccctaaactaccacattgcattcttaacaacatctaaactacagttcataacttaattcatcactaacaatc 13505504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 42562629 - 42562729
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaac-aaacatagctctaactaattacatccttaacaat 115  Q
    |||||||||||||| ||||| ||||||||||||||||  |||||   ||||| |||||||||||| || ||||  ||||||||||| |||| ||| ||||    
T  42562629 caacaatgtcatttcaatccgtaaactaccacattgctctcaaacatactataatcaacattaacgaaccata-ttctaactaatttcatcattagcaat 42562727  T
Q  116 cc 117  Q
    ||    
T  42562728 cc 42562729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 39463636 - 39463568
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||   | ||| ||||| ||||||||||    
T  39463636 caacaatgtcatttcaatccgtaaactaccacattgcagtcaaacatattataatcaatattaacaaac 39463568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 21058507 - 21058568
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||| ||||||||||||||||| | || | |||| | |||||||||||||| ||||||||||    
T  21058507 taattatcacttacttgatattttagaagaaattggctttgaatggcgcaaaaatggtgaaa 21058568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 32309790 - 32309858
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||   | ||| ||||| ||||||||||    
T  32309790 caacaatgtcatttcaatccgtaaactactacattgcagtcaaacatattataatcaaaattaacaaac 32309858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 5e-88; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 49033135 - 49033425
Alignment:
Q  8 tataatcaacaacaatgtcattt-gaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatc 106  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49033135 tataatcaacaacaatgtcattttgaatccataaactaccacattgcagtcaaattaactatcatcaacattaacaaacatagctctaactaattacatc 49033234  T
Q  107 cttaacaatccnnnnnnnnnnnnnnnnnnnntcatttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttcta 206  Q
     ||||||||||                    ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49033235 attaacaatccaaaaaacaaaaaaaaaaa--tcatt-gaaacatttcattgaacacgtagtgtgcatttttcaaacaactatgtaatcttacattttcta 49033331  T
Q  207 aaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaaga 300  Q
    |||||||||||| ||||||||||| |||||||||||||  |||||||||  | |||||||||||||||||||||||||||||||||| ||||||    
T  49033332 aaccctaaactaccacattgtaccttaaacaacatctaaacaacaattctcatgttaaatcatcactaacaatcataatctttaacaagcaaga 49033425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 28443562 - 28443287
Alignment:
Q  19 acaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatccn 118  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  28443562 acaatgtcatttgaatccataaactaccacattgcagtcaaattaactatcatcaacattaacaaacatagctctaactaattacatcattaacaatcca 28443463  T
Q  119 nnnnnnnnnnnnnnnnnnntcatttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaacta 218  Q
                       ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  28443462 aaaaaaaaaaata------tcatt-gagacatttcatcgaacacgtagtgtgcatttttcaaacaactatgtaattatacatttactaaaccctaaacta 28443370  T
Q  219 tcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 301  Q
     ||||||||||| |||||||||||||  |||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  28443369 ccacattgtaccataaacaacatctaaacaacaattccaaagttaaatcattactaacaatcataatctttaacatgcaagac 28443287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 371 - 512
Target Start/End: Original strand, 49033496 - 49033637
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 470  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||  ||||||||||||||||| || ||    
T  49033496 gaagtagtataataatcacttacttgatattgtggacgaaatttggtttgaatggcgcaaaaatggtggaattcggatttgagggtgaaaatttcgtctt 49033595  T
Q  471 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgct 512  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  49033596 ttgaaaagttgaaaaatggaggaatggaggtcctgtgttgct 49033637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 371 - 492
Target Start/End: Complemental strand, 28443216 - 28443095
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 470  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||  |||| |||||||| ||   ||||    
T  28443216 gaagtagtataataatcacttacttgatattgtggacgaaatttggtttgaatgacgcaataatggtgaaattcggatttgggggtgaaatttgcatttt 28443117  T
Q  471 ttgaaaagttgcaaaatggagg 492  Q
    ||||||||||| ||||||||||    
T  28443116 ttgaaaagttgaaaaatggagg 28443095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 48997136 - 48997001
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||| ||||||||    
T  48997136 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaatttctaagtta 48997037  T
Q  264 aatcatcactaacaatcataatctttaacatgcaag 299  Q
    | ||||||||||||||||| |   ||||||||||||    
T  48997036 attcatcactaacaatcatcaaaattaacatgcaag 48997001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 50907702 - 50907584
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||| | | | ||| |||||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||    
T  50907702 tagtgtgcaattttcaaacaactaggtaatataataatttgtaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcctaagtta 50907603  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  50907602 attcatcactaacaatcat 50907584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 273
Target Start/End: Original strand, 33298776 - 33298885
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| ||||||||||  |||||||| ||||  |||||||||||||||||    
T  33298776 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactagcacattgtactttaaacaacttctaaacaacaattcctaagtta 33298875  T
Q  264 aatcatcact 273  Q
    | ||||||||    
T  33298876 attcatcact 33298885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 43784936 - 43785048
Alignment:
Q  168 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 267  Q
    ||||| |||||||||||||| | | ||| ||| ||||||||| |||||||| |||||||||| ||||||||||||||  ||||| ||||||| |||| ||    
T  43784936 gtgcaattttcaaacaactaagaattctaacaatttctaaacactaaactaccacattgtactctaaacaacatctaaacaacagttcctaacttaattc 43785035  T
Q  268 atcactaacaatc 280  Q
    |||| ||||||||    
T  43785036 atcagtaacaatc 43785048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 486
Target Start/End: Original strand, 24965806 - 24965907
Alignment:
Q  385 atcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagttgcaa 484  Q
    |||||||||||||||||||||  | |||| | ||||| ||||||||||||||||||| |||   |||  || |||||||||||||||||| |||||| ||    
T  24965806 atcacttacttgatattgtgggagaaattggctttgattggcgcaagaatggtgaaaatcgcacttggaggagaaaattttgttttttgagaagttggaa 24965905  T
Q  485 aa 486  Q
    ||    
T  24965906 aa 24965907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 28540940 - 28541047
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||| | || |||| ||| ||| |||||||||||||| |||||||||| |||||||||           |||||||||||||    
T  28540940 tagtgtgcaattttcaaacaaccaggtcatctaacaatttgtaaaccctaaactaccacattgtactctaaacaac-----------aattcctaagtta 28541028  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  28541029 attcatcactaacaatcat 28541047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 24965461 - 24965539
Alignment:
Q  39 aaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    |||||| ||||||||| || || ||||||| |||||||||||||||||||  |||||| |||| |||| ||||||||||    
T  24965461 aaactatcacattgcagtctaactaactataatcaacattaacaaacatatttctaacaaatttcatcattaacaatcc 24965539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 48996927 - 48996857
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  48996927 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 48996857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 28540795 - 28540863
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||   | ||| ||||||||||||||||    
T  28540795 caacaatgtcatttcaatccgtaaactaccacattgcagtcaaacatattataatcaacattaacaaac 28540863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 23348832 - 23348893
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||| ||||| ||||||||||| ||||| ||||| ||||||| ||||||||||||||||    
T  23348832 tgtcatttcaatcc-taaactaccacgttgcagtcaaactaactataatcaacattaacaaac 23348893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 44488340 - 44488270
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||||||  |||| |||||||||||||||||||||    |||| | |||||||||||||||||||||||||    
T  44488340 gaagtagggtaatcatcacttacttgatattgtgggaaaaattggctttgaatggcgcaagaatggtgaaa 44488270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 28541147 - 28541208
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||| ||||||||||||||||| |||| | |||| | ||||||||||||||||||| |||||    
T  28541147 taatcatcacttacttgatattttggaagaaattggctttgaatggcgcaagaatgatgaaa 28541208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 20007278 - 20007346
Alignment:
Q  47 acattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaat 115  Q
    |||||||| || || ||||||| |||||||||||||||||||  |||||| |||| |||| ||||||||    
T  20007278 acattgcagtctaactaactataatcaacattaacaaacatatttctaacaaatttcatcattaacaat 20007346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 33298632 - 33298700
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||   | ||| ||||| ||||||||||    
T  33298632 caacaatgtcatttcaatccgtaaactaccacattgcagtcaaacatattataatcaaaattaacaaac 33298700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 44488536 - 44488460
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaaca 240  Q
    ||||||| | ||||| |||||||| ||||||| ||| ||| |||||||||||||| || ||| ||| ||||||||||    
T  44488536 tagtgtgaaattttcgaacaactaggtaatctaacaatttgtaaaccctaaactaccatattatactctaaacaaca 44488460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 50907846 - 50907778
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| || || ||||||||||||||||| |||||   | ||| ||||||||||||||||    
T  50907846 caacaatgtcatttcaaaccgtaaactaccacattgcagtcaaacatattataatcaacattaacaaac 50907778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 44488464 - 44488429
Alignment:
Q  247 caacaattcctaagttaaatcatcactaacaatcat 282  Q
    |||||||||||||||||| |||||||||||||||||    
T  44488464 caacaattcctaagttaattcatcactaacaatcat 44488429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 50907485 - 50907424
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||| ||| ||||||||||||| |||| | |||| | ||||||||||||||||||| |||||    
T  50907485 taatcatcgcttacttgatattttggaagaaattggctttgaatggcgcaagaatgatgaaa 50907424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 37313431 - 37313503
Alignment:
Q  168 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaaca 240  Q
    ||||| |||| ||||||||| | ||||| ||| ||||||||||||||| |  | |||||||| ||||||||||    
T  37313431 gtgcaatttttaaacaactaagaaatctaacaatttctaaaccctaaattgccgcattgtactctaaacaaca 37313503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 44488680 - 44488612
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||| ||| ||||| ||||||||||||||||| |||||   | ||| ||||| ||||||||||    
T  44488680 caacaatgtcgtttcaatccgtaaactaccacattgcagtcaaacatattataatcaaaattaacaaac 44488612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 48955707 - 48955643
Alignment:
Q  213 aaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaaca 277  Q
    |||||| ||||||  || |||||||||||||||   ||||||||||| |||| ||||||||||||    
T  48955707 aaactaccacatttcactctaaacaacatctacaatacaattcctaacttaattcatcactaaca 48955643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 48997280 - 48997212
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| |||||||||||||| || |||||   | ||| ||||| ||||||||||    
T  48997280 caacaatgtcatttcaatccgtaaactaccacattacagtcaaacatattataatcaaaattaacaaac 48997212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 6e-69; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 165 - 301
Target Start/End: Complemental strand, 940040 - 939904
Alignment:
Q  165 agtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaa 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  940040 agtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctaagcaacaattcctaagttaa 939941  T
Q  265 atcatcactaacaatcataatctttaacatgcaagac 301  Q
    |||||||||||||||||||||||||||||||||||||    
T  939940 atcatcactaacaatcataatctttaacatgcaagac 939904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 371 - 512
Target Start/End: Complemental strand, 939834 - 939693
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 470  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  939834 gaagtagtataataatcacttacttgatattgtggatgaaatttggtttgaatggcgcaagaatggtgaaattcgaatatgagggtgaaaattttgtttt 939735  T
Q  471 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgct 512  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  939734 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgct 939693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 940181 - 940072
Alignment:
Q  8 tataatcaacaacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatcc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  940181 tataatcaacaacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagttctaactaattacatca 940082  T
Q  108 ttaacaatcc 117  Q
    ||||||||||    
T  940081 ttaacaatcc 940072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 18206685 - 18206797
Alignment:
Q  168 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 267  Q
    ||||| |||||||||||||| | ||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||  ||||| ||||||| |||| ||    
T  18206685 gtgcaattttcaaacaactaagaaatctaacaatttctaaaccctaaactaccacattgtactctaaacaacatctaaacaacagttcctaacttaattc 18206784  T
Q  268 atcactaacaatc 280  Q
    |||||||||||||    
T  18206785 atcactaacaatc 18206797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 31118953 - 31119047
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    |||||||| ||||| |||| |||||||||| | ||||| ||||||| |||||||||||||||||||  ||||||||||| |||| ||||||||||    
T  31118953 tgtcatttcaatccgtaaagtaccacattgtagtcaaactaactataatcaacattaacaaacatatttctaactaatttcatcattaacaatcc 31119047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 481
Target Start/End: Complemental strand, 25678579 - 25678479
Alignment:
Q  381 aataatcacttacttgatattgtggacggaatttggttt-gaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagt 479  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| || |  |||| |||||||| ||| |||||| |||||||    
T  25678579 aataatcacttacttgatattgtggacg-aatttggttttgaatggcgcaagaatgatgaattttggatttgggggtgaaattttcgtttttagaaaagt 25678481  T
Q  480 tg 481  Q
    ||    
T  25678480 tg 25678479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 28033712 - 28033598
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| | |||||   | ||| |||||||||||||| | |||||||| ||||||||| ||||  |||||||||||||||||    
T  28033712 tagtgtgcaattttcaaacaactaggcaatctagtaatttgtaaaccctaaactaccgcattgtactctaaacaacttctaaacaacaattcctaagtta 28033613  T
Q  264 aatcatcactaacaa 278  Q
    |   |||||||||||    
T  28033612 atcaatcactaacaa 28033598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 481
Target Start/End: Complemental strand, 24928965 - 24928865
Alignment:
Q  381 aataatcacttacttgatattgtggacggaatttgg-tttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagt 479  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||| || |  |||| |||||||| ||| |||| | |||||||    
T  24928965 aataatcacttacttgatattgtggac-gaatttggctttgaatgacgcaagaatgatgaattttggatttgggggtgaaattttcgtttctagaaaagt 24928867  T
Q  480 tg 481  Q
    ||    
T  24928866 tg 24928865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 15424146 - 15424208
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||| ||| | |||||||||||||||||| |||| ||||||| ||||||||||||||||    
T  15424146 tgtcatttcaattcgtaaactaccacattgcaaacaaactaactataatcaacattaacaaac 15424208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 11815759 - 11815698
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  11815759 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 11815698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 15424297 - 15424383
Alignment:
Q  191 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaaca 277  Q
    ||||| ||| ||| |||||||||||||| ||||| | || ||||||||||||||    ||||||||||| |||| ||||||||||||    
T  15424297 aatctaacaatttataaaccctaaactaccacatagcactctaaacaacatctaaattacaattcctaatttaattcatcactaaca 15424383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 486
Target Start/End: Original strand, 31119299 - 31119413
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcg-agtttgagggtgaaaattttgttt 469  Q
    |||||||  |||| ||||||||||||||||||||   | |||| | ||||||||| ||||||||||||||| ||| | || ||||  ||||||||||| |    
T  31119299 gaagtagattaatcatcacttacttgatattgtgagagaaattggctttgaatggtgcaagaatggtgaaaatcgcacttagagg--gaaaattttgtgt 31119396  T
Q  470 tttgaaaagttgcaaaa 486  Q
    || ||||||||| ||||    
T  31119397 ttagaaaagttggaaaa 31119413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 20931296 - 20931249
Alignment:
Q  38 taaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||    
T  20931296 taaactaccacattgcaatcaaacatactataatcaacattaacaaac 20931249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 27333141 - 27333032
Alignment:
Q  168 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 267  Q
    ||||| |||||||||||||| | ||||| ||| ||| |||||| ||||||| ||||||||||  ||   ||||||||  | ||||||||||  |||| |     
T  27333141 gtgcaattttcaaacaactaagaaatctaacaatttttaaaccataaactaccacattgtactgta---aacatctaaactacaattcctacattaatta 27333045  T
Q  268 atcactaacaatc 280  Q
    |||||||||||||    
T  27333044 atcactaacaatc 27333032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 11807619 - 11807712
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatc 116  Q
    |||||||| ||||| | ||||||||||||||| |||||   ||||| |||||||||||| |||  |  |||||||||||  ||| |||||||||    
T  11807619 tgtcatttcaatccgtgaactaccacattgcagtcaaacatactataatcaacattaactaaccaatttctaactaattttatcattaacaatc 11807712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 20931167 - 20931106
Alignment:
Q  168 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtac 229  Q
    ||||| |||||||||||||| | ||||| ||  ||||||| |||||||||| ||||||||||    
T  20931167 gtgcaattttcaaacaactaagaaatctaacgatttctaatccctaaactaccacattgtac 20931106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 41799438 - 41799702
Alignment:
Q  14 caacaacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaaca 113  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| || | |    
T  41799438 caacaacaatgtcatttgaatccataaactaccacattgtagtcaaattaactatcatcaacattaacaaacatagctctatctaattacatcatttata 41799537  T
Q  114 atccnnnnnnnnnnnnnnnnnnnntcatttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaacccta 213  Q
    ||||                    ||||| || |||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  41799538 atccaaaaaaacaaaataaaca--tcatt-gagacatttcaccgaacacgtag-gtgcatttttcaaacaactatgtaatctaacattttctaaacccta 41799633  T
Q  214 aactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcat 282  Q
    ||||| |||||||||||||||||||||||||  |||||||||||||||||  |  ||||||||||||||    
T  41799634 aactaccacattgtaccctaaacaacatctaaacaacaattcctaagttatttggtcactaacaatcat 41799702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 13553375 - 13553111
Alignment:
Q  19 acaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatccn 118  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||  |||||||||||||||| ||||||||||     
T  13553375 acaatgtcatttgaatccataaactatcacattgcagtcaaattaactataattaacattaacaaacatatttctaactaattacatcattaacaatcca 13553276  T
Q  119 nnnnnnnnnnnnnnnnnnntcatttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaacta 218  Q
                       ||| |||| |||||| | | || || |||||| || |||||||||||||| ||||||| ||| ||| |||||  |||||||    
T  13553275 aaaaaacaaaaaaaaaatatca-ttgacacattttaccaaacacatagtgtacaattttcaaacaactaggtaatctaacaatttttaaactttaaacta 13553177  T
Q  219 tcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataa 284  Q
     |||||||||| ||||| ||||||||  |||||||||||||||||| || ||||||||||||||||    
T  13553176 ccacattgtactctaaataacatctaaacaacaattcctaagttaattcgtcactaacaatcataa 13553111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 8525106 - 8525225
Alignment:
Q  163 gtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtt 262  Q
    |||||| ||| ||||||||||||||||||||||  || |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  8525106 gtagtgcgcaattttcaaacaactatgtaatctagcaatttctaaaccctaaactaccacattgtaccctaaacaacatctaaacaacaattcctaagtt 8525205  T
Q  263 aaatcatcactaacaatcat 282  Q
    || || |||||||| |||||    
T  8525206 aattcgtcactaaccatcat 8525225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 38455527 - 38455409
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||| ||||||||    
T  38455527 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaatttctaagtta 38455428  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  38455427 attcatcactaacaatcat 38455409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 21065904 - 21066016
Alignment:
Q  168 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 267  Q
    ||||| |||||| ||||||| | ||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||  ||||| ||||||| |||| ||    
T  21065904 gtgcaattttcatacaactaagaaatctaacaatttctaaaccctaaactaccacattgtactctaaacaacatctaaacaacagttcctaacttaattc 21066003  T
Q  268 atcactaacaatc 280  Q
    | |||||||||||    
T  21066004 accactaacaatc 21066016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 8524977 - 8525042
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacata 88  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||    
T  8524977 tgtcatttgaatgcataaacaaccacattgcagtcaaattaactataatcaacattaacaaacata 8525042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 372 - 460
Target Start/End: Complemental strand, 13553024 - 13552936
Alignment:
Q  372 aagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaa 460  Q
    |||||| ||||| |||||||||||||||||||||||| |||| | ||| ||||||||||||||| |||||||||  |||| ||||||||    
T  13553024 aagtaggataatcatcacttacttgatattgtggacgaaattggctttaaatggcgcaagaatgatgaaattcggatttgggggtgaaa 13552936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 22518006 - 22518100
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    |||||||| | ||| ||||||||||||||||||||||| ||||||| ||||||| ||||||||  |  ||||||||||| |||| ||||||||||    
T  22518006 tgtcatttcagtccgtaaactaccacattgcaatcaaactaactataatcaacaataacaaaccaatttctaactaatttcatcattaacaatcc 22518100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 13609046 - 13608954
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaat 115  Q
    |||||||| ||||| |||| |||||||||||| ||||| ||||||| ||||||||||||||||  |  ||||||||||| |||| ||||||||    
T  13609046 tgtcatttcaatccgtaaattaccacattgcagtcaaactaactataatcaacattaacaaaccaatttctaactaatttcatcattaacaat 13608954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 464
Target Start/End: Original strand, 41799801 - 41799884
Alignment:
Q  381 aataatcacttacttgatattgtggacggaatttgg-tttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattt 464  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| || |  |||| ||||||||||||    
T  41799801 aataatcacttacttgatattgtggac-gaatttggctttgaatggcgcaagaatgatgaattttggatttgggggtgaaaattt 41799884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 488
Target Start/End: Original strand, 8525322 - 8525431
Alignment:
Q  379 ataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaag 478  Q
    ||||| ||||||||| |||| ||||||||| |||||| |||||||||||||||| || |||||||||| |||  ||||| || | | || ||| ||||||    
T  8525322 ataatcatcacttacatgatgttgtggacgaaatttgctttgaatggcgcaagattgatgaaattcgaattttggggtgcaattctcgtgtttggaaaag 8525421  T
Q  479 ttgcaaaatg 488  Q
    ||| ||||||    
T  8525422 ttggaaaatg 8525431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 15826101 - 15826193
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaat 115  Q
    |||||||| ||||| ||||||| ||||||||| ||||| ||||||| |||||||||||||||   |  ||||||||||| |||| ||||||||    
T  15826101 tgtcatttcaatccgtaaactatcacattgcagtcaaactaactataatcaacattaacaaatcaatttctaactaatttcatcattaacaat 15826193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 8231734 - 8231807
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcg 445  Q
    |||||||| |||||||||||||||||||| |||||  | |||| | ||||||||||||||||||| |||||||||    
T  8231734 gaagtagtttaataatcacttacttgata-tgtgggagaaattggctttgaatggcgcaagaatgatgaaattcg 8231807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 38455319 - 38455249
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  38455319 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 38455249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 12625408 - 12625296
Alignment:
Q  168 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 267  Q
    ||||| |||||||||||||| | ||||| ||| |||||||| | ||||||| |||||  ||| ||||| ||||||||  | ||||||  ||| |||| ||    
T  12625408 gtgcaattttcaaacaactaagaaatctaacaatttctaaatcataaactaccacatattactctaaataacatctaaactacaatttataacttaattc 12625309  T
Q  268 atcactaacaatc 280  Q
    |||||||||||||    
T  12625308 atcactaacaatc 12625296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 16728672 - 16728740
Alignment:
Q  211 ctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaat 279  Q
    |||||||| ||||||| || ||||||||||||||  | ||||||||||| |||| ||||||||||||||    
T  16728672 ctaaactaccacattggactctaaacaacatctaaactacaattcctaacttaattcatcactaacaat 16728740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 17705744 - 17705812
Alignment:
Q  211 ctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaat 279  Q
    |||||||| ||||||| || ||||||||||||||  | ||||||||||| |||| ||||||||||||||    
T  17705744 ctaaactaccacattggactctaaacaacatctaaactacaattcctaacttaattcatcactaacaat 17705812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 17715723 - 17715797
Alignment:
Q  205 taaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaat 279  Q
    |||| ||||||||| ||||||| || ||||||||||| ||  | ||||||||||| |||| ||||||||||||||    
T  17715723 taaatcctaaactaccacattggactctaaacaacatataaactacaattcctaacttaattcatcactaacaat 17715797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 21065762 - 21065824
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||| ||||||||||||||||||||| | |||||   ||||| ||||||||||||||||    
T  21065762 tgtcatttcaatccataaactaccacattgtagtcaaacatactataatcaacattaacaaac 21065824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 16728631 - 16728674
Alignment:
Q  201 tttctaaaccctaaactatcacattgtaccctaaacaacatcta 244  Q
    |||||||||||||||||| ||||||| || ||||||||||||||    
T  16728631 tttctaaaccctaaactaccacattggactctaaacaacatcta 16728674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 17705703 - 17705746
Alignment:
Q  201 tttctaaaccctaaactatcacattgtaccctaaacaacatcta 244  Q
    |||||||||||||||||| ||||||| || ||||||||||||||    
T  17705703 tttctaaaccctaaactaccacattggactctaaacaacatcta 17705746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 29033579 - 29033520
Alignment:
Q  220 cacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaat 279  Q
    |||||||||| ||||| ||| | ||  |||||||||||||||||| ||||||||||||||    
T  29033579 cacattgtactctaaataacttataaacaacaattcctaagttaattcatcactaacaat 29033520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 6715705 - 6715754
Alignment:
Q  19 acaatgtcatttgaatccataaactaccacattgcaatcaaattaactat 68  Q
    |||||||||||| ||||| ||||||| ||||||||| ||||| |||||||    
T  6715705 acaatgtcatttcaatccgtaaactatcacattgcagtcaaactaactat 6715754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 8229975 - 8230027
Alignment:
Q  249 acaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 301  Q
    ||||||||||| |||| |||||||||||||||||||    |||||||||||||    
T  8229975 acaattcctaacttaattcatcactaacaatcataaaaactaacatgcaagac 8230027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 16728493 - 16728553
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaa 83  Q
    |||||||| |||| ||||||||| | |||||| ||||| | ||||| ||||||||||||||    
T  16728493 tgtcatttcaatctataaactactaaattgcactcaaactcactataatcaacattaacaa 16728553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 17705565 - 17705625
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaa 83  Q
    |||||||| |||| ||||||||| | |||||| ||||| | ||||| ||||||||||||||    
T  17705565 tgtcatttcaatctataaactactaaattgcactcaaactcactataatcaacattaacaa 17705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 371 - 512
Target Start/End: Complemental strand, 9384878 - 9384737
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 470  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||    
T  9384878 gaagtagtataatagtcacttacttgatattgtggacgaaatttggtttgaatggcgcaagaatggtgaaattcggatttgagggtgaaaatttcgtttt 9384779  T
Q  471 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgct 512  Q
    ||||||||||| |||||||| ||||||||||| |||||||||    
T  9384778 ttgaaaagttgaaaaatggatgaatggaggttttgtgttgct 9384737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 9385068 - 9384956
Alignment:
Q  182 caactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatca 281  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  9385068 caactatgtaatcttacattttctaaaccctaaactaccacattgtaccctaaacaacatctaaacaacaattcctaagttaaatcatcactaacaatca 9384969  T
Q  282 taatctttaacat 294  Q
    |||||||||||||    
T  9384968 taatctttaacat 9384956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 14095047 - 14094929
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||||| ||| |||| ||||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||    
T  14095047 tagtgtgcagttttcaaacaactaggtaatctaacaatttcaaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcctaagtta 14094948  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  14094947 actcatcactaacaatcat 14094929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 10529382 - 10529264
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||| ||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||||||||||||    
T  10529382 tagtgtgcaatttttaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagtta 10529283  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  10529282 attcatcactaacaatcat 10529264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 37229972 - 37230052
Alignment:
Q  202 ttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcat 282  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||  |||||||||||||||||| |||||||||||||||||    
T  37229972 ttctaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagttaattcatcactaacaatcat 37230052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 512
Target Start/End: Original strand, 23558852 - 23558908
Alignment:
Q  456 tgaaaattttgttttttgaaaagttgcaaaatggaggaatggaggttctgtgttgct 512  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||    
T  23558852 tgaaaatttcgttttttgaaaagttgagaaatggaggaatggaggttctgtgttgct 23558908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 37229896 - 37229976
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatcta 244  Q
    ||||||||| |||||||||||||| ||||| | ||| ||| |||||||||||||| |||||||||| ||||||||| ||||    
T  37229896 tagtgtgcaattttcaaacaactaggtaatttaacaatttgtaaaccctaaactaccacattgtactctaaacaacttcta 37229976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 9238590 - 9238652
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||| ||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  9238590 tgtcatttcaatccgtaaactaccacattgcagtcaaactaactataatcaacattaacaaac 9238652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 22721690 - 22721600
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaaca 113  Q
    |||||||| ||||| |||||| |||||||||| ||||| ||||||| ||||| |||||||||||||  ||||||||||  |||| ||||||    
T  22721690 tgtcatttcaatccgtaaactgccacattgcagtcaaactaactataatcaaaattaacaaacatatttctaactaatgtcatcattaaca 22721600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 494
Target Start/End: Complemental strand, 10529171 - 10529048
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcg-agtttgagggtgaaaattttgttt 469  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | ||| ||||||||||||||||||||| ||| | || ||||| |||||||| || |    
T  10529171 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttaaatggcgcaagaatggtgaaaatcgcacttggaggg-gaaaatttcgtgt 10529073  T
Q  470 tttgaaaagttgcaaaatggaggaa 494  Q
    || || |||||| ||||| ||||||    
T  10529072 ttggagaagttggaaaattgaggaa 10529048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 28838259 - 28838351
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaat 115  Q
    |||||||| ||||  ||||||||||||||||| ||||| | ||||| |||||||||||||| |  |  ||||||||||| |||| ||||||||    
T  28838259 tgtcatttcaatctgtaaactaccacattgcactcaaactcactataatcaacattaacaatccaatttctaactaatttcatcattaacaat 28838351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 37230141 - 37230216
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcga 446  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||| |||||||||||||||| ||||    
T  37230141 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatgacgcaagaatggtgaaaatcga 37230216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 16995907 - 16995813
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    |||||||| ||||  ||||||||||||||||||||||| ||||||| ||||||  |||||||   |  |||||| |||| |||| ||||||||||    
T  16995907 tgtcatttcaatctgtaaactaccacattgcaatcaaactaactataatcaactataacaaatcaatttctaacaaattccatcattaacaatcc 16995813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 14094829 - 14094768
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||| |||||||||||||||||||||  | |||| | ||||||||||||||||||| |||||    
T  14094829 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatgatgaaa 14094768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 22721346 - 22721282
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatg 435  Q
    ||||||| ||||| |||||||||||||||||||||  | |||| | |||||||| ||||||||||    
T  22721346 gaagtaggataatcatcacttacttgatattgtgggagaaattggctttgaatgacgcaagaatg 22721282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 37229755 - 37229819
Alignment:
Q  21 aatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||| |||||||||||||| ||||||||||||||   | ||| ||||| ||||||||||    
T  37229755 aatgtcatttcaatccataaactacgacattgcaatcaaacatattataatcaaaattaacaaac 37229819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 16995722 - 16995655
Alignment:
Q  213 aaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 280  Q
    |||||| | ||||| || ||||||||||||||  | ||||||||||| |||| |||||||||||||||    
T  16995722 aaactacctcattgcactctaaacaacatctaaactacaattcctaacttaattcatcactaacaatc 16995655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 20520661 - 20520600
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||| ||||||||||||||||| |||| | |||| | |||||||||| |||||||| |||||    
T  20520661 taatcatcacttacttgatattttggaagaaattggctttgaatggcacaagaatgatgaaa 20520600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 10529526 - 10529458
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||   | ||| ||||| ||||||||||    
T  10529526 caacaatgtcatttcaatccgtaaactactacattgcagtcaaacatattataatcaaaattaacaaac 10529458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 14095191 - 14095123
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| |||||||||||||||   |||||   ||||| ||||||| ||||||||    
T  14095191 caacaatgtcatttcaatccgtaaactaccacattgttctcaaacatactataatcaacaataacaaac 14095123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 142 - 301
Target Start/End: Complemental strand, 6702901 - 6702753
Alignment:
Q  142 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 241  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         
T  6702901 ttgagacatttcatcgaacacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactaccacattgtaccctaaac----- 6702807  T
Q  242 ctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 301  Q
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6702806 ------aacaattcctaagttaaatcatcactaacaatcataatctttaatatgcaagac 6702753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 371 - 492
Target Start/End: Complemental strand, 6702683 - 6702562
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 470  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||  |||| |||||||| ||| |||||    
T  6702683 gaagtagtataataatcacttacttgatattgtggacgaaatttggtttgaatggcacaagaatagtgaaattcggatttgggggtgaaattttcgtttt 6702584  T
Q  471 ttgaaaagttgcaaaatggagg 492  Q
    ||||||||||| ||||||||||    
T  6702583 ttgaaaagttgaaaaatggagg 6702562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 6703001 - 6702916
Alignment:
Q  19 acaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattaca 104  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6703001 acaatgtcatttgaatccataaactaccacattgcagtcaaattaactatcatcaacattaacaaacatagctctaactaattaca 6702916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 2741024 - 2740906
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||||||||||||    
T  2741024 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagtta 2740925  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  2740924 attcatcactaacaatcat 2740906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 13272179 - 13272061
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||||| ||| | | |||||||||||||| |||||||||| ||||||||| ||||  |||||||||||||||||    
T  13272179 tagtgtgcaattttcaaacaactaggtaatctaacaatatgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagtta 13272080  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  13272079 attcatcactaacaatcat 13272061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 13271972 - 13271902
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  13271972 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 13271902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 22553127 - 22553199
Alignment:
Q  372 aagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattc 444  Q
    |||||| ||||| |||||||||||||||||||||  | |||| | |||||||||| |||||||| ||||||||    
T  22553127 aagtaggataatcatcacttacttgatattgtggtagaaattggctttgaatggcacaagaatgatgaaattc 22553199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 22552796 - 22552875
Alignment:
Q  38 taaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    ||||||| ||||||||| ||||| |||||||   |||||||||||||||||  |||||| |||| |||| ||||||||||    
T  22552796 taaactatcacattgcagtcaaactaactatatacaacattaacaaacatatttctaacaaatttcatcattaacaatcc 22552875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 24211179 - 24211286
Alignment:
Q  191 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataatcttta 290  Q
    ||||| ||| |||||||||  ||||||| ||||||| || ||||||||||||||  | ||||||||||| |||| |||||| |||| ||| |||   |||    
T  24211179 aatctaacaatttctaaactataaactaccacattgcactctaaacaacatctaaactacaattcctaacttaattcatcagtaactatcctaaaaatta 24211278  T
Q  291 acatgcaa 298  Q
    ||||||||    
T  24211279 acatgcaa 24211286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 24211047 - 24211107
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaa 83  Q
    |||||||| |||| ||||||||| |||||||| ||||| | ||||| ||||||||||||||    
T  24211047 tgtcatttcaatctataaactactacattgcagtcaaacttactataatcaacattaacaa 24211107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 1817799 - 1817889
Alignment:
Q  23 tgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaaca 113  Q
    |||||||||||||  ||||||| ||||||||| ||||| | ||| | |||||||||||||| |  |  ||||||||||| |||| ||||||    
T  1817799 tgtcatttgaatctctaaactatcacattgcactcaaactcactctaatcaacattaacaatccaatttctaactaatttcatcattaaca 1817889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 441
Target Start/End: Complemental strand, 2740815 - 2740745
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||||  ||||||||||||||    
T  2740815 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggtacaagaatggtgaaa 2740745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 8431298 - 8431209
Alignment:
Q  191 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 280  Q
    ||||| ||| ||||||||||| |||||||| ||||| | ||||||||||||  |  | |||||| |||| |||| |||| ||||||||||    
T  8431298 aatctaacaatttctaaacccaaaactatcgcattgcatcctaaacaacattcaaactacaatttctaacttaattcattactaacaatc 8431209  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 2741168 - 2741100
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||   | ||| ||||| ||||||||||    
T  2741168 caacaatgtcatttcaatccgtaaactaccacattggagtcaaacatattataatcaaaattaacaaac 2741100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 13272323 - 13272255
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    ||||||| |||||| ||||| ||||||||||||||||| |||||   | ||| ||||| ||||||||||    
T  13272323 caacaatatcatttcaatccgtaaactaccacattgcactcaaacatattataatcaaaattaacaaac 13272255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 190
Target Start/End: Complemental strand, 36933156 - 36933128
Alignment:
Q  162 cgtagtgtgcatttttcaaacaactatgt 190  Q
    |||||||||||||||||||||||||||||    
T  36933156 cgtagtgtgcatttttcaaacaactatgt 36933128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 9689 - 9948
Alignment:
Q  19 acaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatccn 118  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||  | |||||||||||||| ||||| ||||     
T  9689 acaatgtcatttgaatccataaacaaccacatttcagtcaaattaactataatcaacattaacaaacataattttaactaattacatcattaacgatcca 9788  T
Q  119 nnnnnnnnnnnnnnnnnnntcatttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaacta 218  Q
                       ||||| || |||||| | |||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||    
T  9789 aaaaaacaaaaaaata---tcatt-gagacattttaccgaacacgtagtgtgcaattttcaaacaactatgtaatctaacaatttctaaaccctaaacta 9884  T
Q  219 tcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcat 282  Q
     ||||||||||||||| |||||||||  |||||||||||||||||| || ||||||||||||||    
T  9885 ccacattgtaccctaaccaacatctaaacaacaattcctaagttaattcgtcactaacaatcat 9948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 5389 - 5271
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| |||||||||||||| ||||||| ||| |||| ||||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||    
T  5389 tagtgtgcagttttcaaacaactaggtaatctaacaatttcaaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcctaagtta 5290  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  5289 actcatcactaacaatcat 5271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 5533 - 5465
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| |||||||||||||||   |||||   ||||| ||||||| ||||||||    
T  5533 caacaatgtcatttcaatccgtaaactaccacattgttctcaaacatactataatcaacaataacaaac 5465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 1374 - 1492
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||| | |||||||| ||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||||||||  ||||||||| |||||||    
T  1374 tagtgtggaattttcaaaaaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcataagtta 1473  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  1474 attcatcactaacaatcat 1492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 1230 - 1298
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||| ||||||||||| ||||| |||||   | ||| ||||||||||||||||    
T  1230 caacaatgtcatttcaatccgtaaactaccactttgcagtcaaacatattataatcaacattaacaaac 1298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 1590 - 1651
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||| ||||||||||||||||| |||| | ||||   ||||||||||||||||||| |||||    
T  1590 taatcatcacttacttgatattttggaagaaattgactttgaatggcgcaagaatgatgaaa 1651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 35007209 - 35007094
Alignment:
Q  167 tgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaat 266  Q
    |||||| |||||||||||||| ||||||| ||  ||| ||||||||||| || |||||||||| ||||||||| ||||  |||||||| ||||||||| |    
T  35007209 tgtgcaattttcaaacaactaggtaatctaactgtttgtaaaccctaaattaccacattgtactctaaacaacttctaaacaacaatttctaagttaatt 35007110  T
Q  267 catcactaacaatcat 282  Q
    ||||||||||||||||    
T  35007109 catcactaacaatcat 35007094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 142 - 301
Target Start/End: Complemental strand, 24122630 - 24122472
Alignment:
Q  142 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 241  Q
    |||| |||||| ||| || || ||| ||||| |||||||||||||| | ||||| ||| |||||||||||||||||| ||||||  || |||||||||||    
T  24122630 ttgagacattttatcaaacacatagagtgcaattttcaaacaactaag-aatctaacaatttctaaaccctaaactaccacatttcactctaaacaacat 24122532  T
Q  242 ctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 301  Q
     ||    |||||||||||||||||||||||||||||||| |||    |||||||||||||    
T  24122531 ttaaagtacaattcctaagttaaatcatcactaacaatcctaaaaactaacatgcaagac 24122472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 373 - 461
Target Start/End: Complemental strand, 24122399 - 24122311
Alignment:
Q  373 agtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaa 461  Q
    ||||| ||||| ||||||||||||||||||||| || |||| | |||||||||||||||||| ||||||||||| |||| |||||||||    
T  24122399 agtagaataatcatcacttacttgatattgtggtcgaaattagctttgaatggcgcaagaatcgtgaaattcgaatttgggggtgaaaa 24122311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 6287900 - 6288007
Alignment:
Q  164 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 263  Q
    ||||||||| ||||||||||| || ||||||| ||| ||| |||||||||||||| |||||||||| |||||||||           |||||||||||||    
T  6287900 tagtgtgcaattttcaaacaaataggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaac-----------aattcctaagtta 6287988  T
Q  264 aatcatcactaacaatcat 282  Q
    | |||||||||||||||||    
T  6287989 attcatcactaacaatcat 6288007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 31020902 - 31020815
Alignment:
Q  191 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaa 278  Q
    ||||| ||| |||||||||||||||||| |||| || || ||||||||||||||  | ||||||||||| |||| |||||||||||||    
T  31020902 aatctaacaatttctaaaccctaaactaccacaatgcactctaaacaacatctaaactacaattcctaacttaattcatcactaacaa 31020815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 18790840 - 18790954
Alignment:
Q  168 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 267  Q
    ||||| |||||||||||||| | ||||| ||| |||||||||| ||||||| ||||||  || ||||||||||||||     |||||||||| |||| ||    
T  18790840 gtgcaattttcaaacaactaagaaatctaacaatttctaaaccataaactagcacatttcactctaaacaacatctaaaatgcaattcctaacttaattc 18790939  T
Q  268 atcactaacaatcat 282  Q
    |||  ||||||||||    
T  18790940 atctttaacaatcat 18790954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 25400997 - 25400935
Alignment:
Q  450 tgagggtgaaaattttgttttttgaaaagttgcaaaatggaggaatggaggttctgtgttgct 512  Q
    ||||||||||||||  |||||||||||||||| |||||||| ||||| ||||| |||||||||    
T  25400997 tgagggtgaaaattacgttttttgaaaagttgaaaaatggatgaatgtaggttttgtgttgct 25400935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 17755055 - 17754980
Alignment:
Q  38 taaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaaca 113  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||| |  |  ||||||||||| |||| ||||||    
T  17755055 taaactaccacattgcaatcaaactcactataatcaacattaacaatccaatttctaactaatttcatcattaaca 17754980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 19222736 - 19222657
Alignment:
Q  201 tttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 280  Q
    |||||||||||||||||| |||||   || ||||||||||||||  | | ||||||||| |||| |||||||||||||||    
T  19222736 tttctaaaccctaaactaccacatatcactctaaacaacatctaaactataattcctaacttaattcatcactaacaatc 19222657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 451
Target Start/End: Complemental strand, 19222566 - 19222486
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttg 451  Q
    ||||||| ||||| || ||||| || |||||||||  | |||| | ||||||||||||||||||| |||||||||| ||||    
T  19222566 gaagtaggataatcattacttattttatattgtgggtgaaattggctttgaatggcgcaagaatgatgaaattcgaatttg 19222486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 6288106 - 6288164
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtg 438  Q
    |||| |||||||||||||||||||||  | |||| | ||||||||| ||||||||||||    
T  6288106 taatcatcacttacttgatattgtgggagaaattggctttgaatggtgcaagaatggtg 6288164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 35012533 - 35012465
Alignment:
Q  17 caacaatgtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaac 85  Q
    |||||||||||||| ||||  ||||||||| |||||||||||||   | ||| ||||| ||||||||||    
T  35012533 caacaatgtcatttcaatcagtaaactaccgcattgcaatcaaacatattataatcaaaattaacaaac 35012465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 34212 - 34301
Alignment:
Q  24 gtcatttgaatccataaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaaca 113  Q
    ||||||| ||||| ||||||||||||||| | ||||| ||||||| |||||||||||||||||||  |||||| |||| |||| ||||||    
T  34212 gtcatttcaatccgtaaactaccacattgtagtcaaactaactataatcaacattaacaaacatatttctaaccaatttcatcattaaca 34301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 441
Target Start/End: Original strand, 34555 - 34625
Alignment:
Q  371 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    ||||||| ||||| |||||||||||||||||||||  | |||| | || ||||||||||||||||||||||    
T  34555 gaagtaggataatcatcacttacttgatattgtgggagaaattggcttggaatggcgcaagaatggtgaaa 34625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 34384 - 34468
Alignment:
Q  201 tttctaaaccctaaa-ctatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataa 284  Q
    |||| |||||||||| ||| ||||||  || ||||||||||||||    || |||||||| |||| |||||||||||||||||||    
T  34384 tttcaaaaccctaaaactaccacatttcactctaaacaacatctaatatactattcctaacttaattcatcactaacaatcataa 34468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 486
Target Start/End: Original strand, 75127 - 75228
Alignment:
Q  385 atcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagttgcaa 484  Q
    |||||||||||||||||||||  | |||| | ||||| ||||||||||||||||||| |||   |||  || |||||||||||||||||| |||||| ||    
T  75127 atcacttacttgatattgtgggagaaattggctttgattggcgcaagaatggtgaaaatcgcacttggaggagaaaattttgttttttgagaagttggaa 75226  T
Q  485 aa 486  Q
    ||    
T  75227 aa 75228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 74782 - 74860
Alignment:
Q  39 aaactaccacattgcaatcaaattaactatcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 117  Q
    |||||| ||||||||| || || ||||||| |||||||||||||||||||  |||||| |||| |||| | ||||||||    
T  74782 aaactatcacattgcagtctaactaactataatcaacattaacaaacatatttctaacaaatttcatcatcaacaatcc 74860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0695 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 1620 - 1681
Alignment:
Q  380 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 441  Q
    |||| |||||||||||||||||||||  | |||| | ||||||||||||||||||| |||||    
T  1620 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatgatgaaa 1681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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