View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4186_low_7 (Length: 457)
Name: NF4186_low_7
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4186_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 229 - 438
Target Start/End: Complemental strand, 52113498 - 52113289
Alignment:
| Q |
229 |
gtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaactttcaatgcgaagaatccctggagattacggcctcccattcgtaggt |
328 |
Q |
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| T |
52113498 |
gtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaacttccaatgcgaagaatccctggagattacggcctcccattcgtaggt |
52113399 |
T |
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| Q |
329 |
cctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagtaaaatgcacaaatacaaatcaaccatttttcgcgcta |
428 |
Q |
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| T |
52113398 |
cctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagcaaaatgcacaaatacaaatcaaccatttttcgcgcta |
52113299 |
T |
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| Q |
429 |
atatgccacc |
438 |
Q |
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| T |
52113298 |
atatgccacc |
52113289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 52113712 - 52113520
Alignment:
| Q |
12 |
catcatcatcacttacctcctcaatatcttatactttccttcaaccagaatttgcattaaaaagaacgataaaacaccgcaatcgctgctccatttccaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52113712 |
catcatcatcacttacctcctcaatatcttatactttccttcaaccagaatttccatttaaaagaacgataaaacaccacaatcgctgctccatttccaa |
52113613 |
T |
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| Q |
112 |
atgtcctttcattccaatttcagtcactccattgaaagcatcagtgtccaacccagataagacatnnnnnnnaactccaattactccaataga |
204 |
Q |
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| T |
52113612 |
atgtcctttcactccaatttcagcgactccattgaaagcatcagtgtccaacccagatacgacatcctccccaattccaattactccaataga |
52113520 |
T |
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