View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4186_low_9 (Length: 364)
Name: NF4186_low_9
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4186_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 41614872 - 41614751
Alignment:
| Q |
20 |
gcaatatagttaaccaagtggaacgttatctataaataatttgatcatgttgctaacaaattctccctttccataccgatttctaattactaactcttgc |
119 |
Q |
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| T |
41614872 |
gcaatatagttaaccaagtggaacgttatctataaataatttgatcatgttgctaacaaattctccctttccataccgatttctaactactaactcttgc |
41614773 |
T |
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| Q |
120 |
ttataataatattataaatatt |
141 |
Q |
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| T |
41614772 |
ttataataatattataaatatt |
41614751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 142 - 354
Target Start/End: Complemental strand, 41614696 - 41614484
Alignment:
| Q |
142 |
gagttaagacaatatgcgaaataaagaaaagacacatcattttttgttgcaaaagatgaaaaagaaatacaaataattgtaatttgtattcgtacaaaaa |
241 |
Q |
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| T |
41614696 |
gagttaaaaaaatatgcgaaataaagaaaagacacatcattttttattgcaaaagatgaaaaagaaatacaaatgattgtcatttgtattcgtacaaaaa |
41614597 |
T |
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| Q |
242 |
atattgatgaaactatgtatggcttgctcnnnnnnnnnnnnnnnnnnnnnnctatgtacgggttgcattttgcattgcaagtcgcacaaccttcgttgtt |
341 |
Q |
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| T |
41614596 |
atattgatgaaactatgcatggcttgctcaaaaaaagaaggaaaaagaaaactatgtacgggttgcattttgcattgcaagtcgcacgacctccgttgtt |
41614497 |
T |
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| Q |
342 |
atctttgcctttg |
354 |
Q |
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| T |
41614496 |
atctttgcgtttg |
41614484 |
T |
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