View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4187_high_1 (Length: 439)

Name: NF4187_high_1
Description: NF4187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4187_high_1
NF4187_high_1
[»] chr7 (13 HSPs)
chr7 (14-425)||(4328514-4328925)
chr7 (65-299)||(4316984-4317219)
chr7 (307-429)||(4316448-4316570)
chr7 (307-425)||(25033737-25033856)
chr7 (108-255)||(6712521-6712670)
chr7 (162-298)||(679492-679632)
chr7 (307-432)||(6711860-6711980)
chr7 (115-283)||(10018882-10019051)
chr7 (165-296)||(38877362-38877496)
chr7 (307-345)||(4541779-4541817)
chr7 (307-339)||(2325284-2325316)
chr7 (245-298)||(4983143-4983200)
chr7 (245-298)||(16076820-16076877)
[»] chr2 (10 HSPs)
chr2 (92-283)||(22578368-22578561)
chr2 (100-274)||(15027335-15027511)
chr2 (307-425)||(22577745-22577862)
chr2 (215-289)||(24023858-24023932)
chr2 (307-399)||(24018043-24018135)
chr2 (185-281)||(24018626-24018724)
chr2 (165-298)||(24371432-24371568)
chr2 (245-298)||(24824976-24825033)
chr2 (307-354)||(29952180-29952225)
chr2 (307-339)||(31590019-31590051)
[»] chr6 (15 HSPs)
chr6 (69-284)||(32796562-32796778)
chr6 (69-293)||(13168185-13168414)
chr6 (307-425)||(32795923-32796042)
chr6 (307-426)||(13168921-13169041)
chr6 (223-289)||(17522388-17522454)
chr6 (185-290)||(9414324-9414432)
chr6 (165-298)||(29682551-29682688)
chr6 (165-298)||(20222863-20223000)
chr6 (245-290)||(21237972-21238017)
chr6 (165-298)||(22116847-22116984)
chr6 (165-268)||(31965575-31965678)
chr6 (307-345)||(26822468-26822506)
chr6 (245-298)||(210132-210189)
chr6 (245-298)||(18448812-18448869)
chr6 (245-298)||(24218757-24218814)
[»] chr1 (6 HSPs)
chr1 (69-283)||(24679974-24680189)
chr1 (380-425)||(24680751-24680796)
chr1 (109-174)||(21918802-21918868)
chr1 (325-391)||(1869886-1869952)
chr1 (213-293)||(2129902-2129985)
chr1 (245-298)||(21784215-21784272)
[»] scaffold0035 (3 HSPs)
scaffold0035 (108-219)||(31206-31317)
scaffold0035 (100-257)||(31940-32097)
scaffold0035 (108-199)||(33374-33465)
[»] chr4 (11 HSPs)
chr4 (69-291)||(12347219-12347444)
chr4 (100-291)||(13883484-13883678)
chr4 (307-425)||(13882886-13883005)
chr4 (73-138)||(12506640-12506704)
chr4 (245-298)||(17168881-17168938)
chr4 (245-298)||(17174453-17174510)
chr4 (245-298)||(21102223-21102280)
chr4 (165-271)||(23793620-23793725)
chr4 (352-392)||(11048934-11048975)
chr4 (213-290)||(55267549-55267629)
chr4 (245-298)||(6518407-6518464)
[»] chr3 (3 HSPs)
chr3 (109-278)||(27992738-27992907)
chr3 (217-284)||(14826646-14826713)
chr3 (245-293)||(17023274-17023326)
[»] scaffold0855 (2 HSPs)
scaffold0855 (162-298)||(3423-3562)
scaffold0855 (307-374)||(4079-4149)
[»] scaffold0847 (2 HSPs)
scaffold0847 (162-298)||(3588-3727)
scaffold0847 (307-374)||(4244-4314)
[»] chr8 (5 HSPs)
chr8 (134-203)||(7465511-7465580)
chr8 (87-192)||(31469781-31469887)
chr8 (162-298)||(24221543-24221683)
chr8 (245-290)||(15634309-15634355)
chr8 (245-290)||(15636082-15636128)
[»] scaffold0157 (1 HSPs)
scaffold0157 (73-138)||(13773-13837)
[»] scaffold0088 (1 HSPs)
scaffold0088 (194-287)||(38481-38578)
[»] chr5 (1 HSPs)
chr5 (165-298)||(23029571-23029708)
[»] scaffold0094 (1 HSPs)
scaffold0094 (222-289)||(1630-1698)
[»] scaffold0014 (1 HSPs)
scaffold0014 (165-298)||(168155-168289)
[»] scaffold1323 (1 HSPs)
scaffold1323 (245-298)||(1898-1955)


Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 4328925 - 4328514
Alignment:
Q  14 ggaagtatatgatatccagccccgttaaagacagacacggtccgtgcatgtacaggcacgaccgtgccaagtcccagactgctatgttttgttatttttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328925 ggaagtatatgatatccagccccgttaaagacagacacggtccgtgcctgtacaggcacgaccgtgccaagtcccagactgctatgttttgttatttttc 4328826  T
Q  114 agacccaaaagtccatgggttgcttgctatgtaatgtttgtaccttttttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4328825 agacccaaaagtccatgggttgcttgctatgtaatgtttgtaccttttttagggcttaagttagcttttaggctataaaaagagcagccaacagacttat 4328726  T
Q  214 tattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgttatttatttttatgtcnnnnnnngaaccaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  4328725 tattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgttatttatttttatgtctttttttgaaccaa 4328626  T
Q  314 taatcccgaggcgctttttattattaattttatcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagagaatcacaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328625 taatcccgaggcgctttttattattaattttatcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagagaatcacaa 4328526  T
Q  414 ttacaacaactc 425  Q
    ||||||||||||    
T  4328525 ttacaacaactc 4328514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 65 - 299
Target Start/End: Complemental strand, 4317219 - 4316984
Alignment:
Q  65 acaggcacgaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-tt 163  Q
    ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| | |||||| ||    
T  4317219 acaggcacgactgtgccatgtcccaggctggtatgttttgttatttttcagacctaaaagcccatgggttgcttgatatgtaatgtttatgccttttctt 4317120  T
Q  164 agggcttaagttagcttttaggctataaaaagagcagccaacaaacttattattcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||||||||| |||||||||| |||| |||||||||| || |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||    
T  4317119 agggcttaagttaacttttaggctgtaaatagagcagccatcagacttattattcatcttttgttattgggaattttctgtgacaattatttctttgaat 4317020  T
Q  264 aaaagttcttattttcttgttatttatttttatgtc 299  Q
    ||||||| ||| ||||||||||||||||||||||||    
T  4317019 aaaagtttttagtttcttgttatttatttttatgtc 4316984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 307 - 429
Target Start/End: Complemental strand, 4316570 - 4316448
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaattttatcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagaga 406  Q
    |||||||||||||| | |||||||||| |||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  4316570 gaaccaataatcccaatgcgctttttaatattaattttatcaataaaaaacccaaactttataacctataaactttcagctaatcacctttaaaaagaga 4316471  T
Q  407 atcacaattacaacaactctctg 429  Q
    |||||||||||||||||||||||    
T  4316470 atcacaattacaacaactctctg 4316448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 25033856 - 25033737
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaatttta--tcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaaga 404  Q
    ||||||||||||||||| ||||||||||| |||||||||  |||||||||| ||||||||||| || |||||| |||||||||||||||| |||||||||    
T  25033856 gaaccaataatcccgagacgctttttatttttaattttacatcaatcaaaa-tccaaacttttcaaactttaatctttcagctaatcaccgttaaaaaga 25033758  T
Q  405 gaatcacaattacaacaactc 425  Q
    |||||| ||||||||||||||    
T  25033757 gaatcataattacaacaactc 25033737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 6712670 - 6712521
Alignment:
Q  108 tttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagccaaca 206  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||| | |||||| |||||| |||||||||||||||||||||||| ||||||||||  |    
T  6712670 tttttcagacgtaaaagcccatgggttgcttgctatgtaatgtttatgccttttcttagggtttaagttagcttttaggctataaatagagcagccacta 6712571  T
Q  207 -aacttattattcatcttttattattgggaattttccgcgacaattattt 255  Q
     | ||||| ||||||||||| || ||||||||| |  | |||||||||||    
T  6712570 gaccttatgattcatcttttgttcttgggaattctatgtgacaattattt 6712521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 162 - 298
Target Start/End: Complemental strand, 679632 - 679492
Alignment:
Q  162 ttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttattat-tcatcttttattattgggaattttccgcgacaattatttctttg 260  Q
    |||||||||||||||| ||||||||||||||| ||||||| | || |||| | || ||||||||| || |||  |||| |  | ||||||||||||||||    
T  679632 ttagggcttaagttag-ttttaggctataaaaggagcagctagcagacttgtaatctcatcttttgttcttgaaaattctaagtgacaattatttctttg 679534  T
Q  261 aataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    |||||||||||    |||||||||||||||||| ||||||||    
T  679533 aataaaagttcttctttattttcttgttatttacttttatgt 679492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 432
Target Start/End: Complemental strand, 6711980 - 6711860
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaatttt-atcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagag 405  Q
    ||||||||||||||||| |||||||||||||||||||| || |||| |||||| |||||||| || |||||| |||||     |||||| ||||| ||||    
T  6711980 gaaccaataatcccgagacgctttttattattaattttcattaatc-aaaatcaaaacttttcaaactttaatctttc-----atcaccattaaatagag 6711887  T
Q  406 aatcacaattacaacaactctctgctg 432  Q
    ||||| ||||||| || ||| ||||||    
T  6711886 aatcaaaattacatcacctccctgctg 6711860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 283
Target Start/End: Original strand, 10018882 - 10019051
Alignment:
Q  115 gacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagccaacaaactt-a 212  Q
    |||| ||||| |||||||||||||||| ||| ||  || | |||||| ||| |||||||||||||||| ||||||||||  |||||||||  | || | |    
T  10018882 gacctaaaagcccatgggttgcttgctttgttattattattccttttcttatggcttaagttagcttt-aggctataaatcgagcagccattagacatga 10018980  T
Q  213 ttattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgt 283  Q
    || |||||||||| || ||||||||| |  | ||||||||||||  | ||| |||||||||||||||||||    
T  10018981 ttcttcatcttttgttcttgggaattctttgtgacaattatttccattaatcaaagttcttattttcttgt 10019051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 296
Target Start/End: Original strand, 38877362 - 38877496
Alignment:
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||||||||| |||||||||||||| |||||||  | ||||| ||| | |||||||||| || |||| |||| |  | ||||||| |||||||||||    
T  38877362 gggcttaagttag-ttttaggctataaatagagcagatagcaaacatatattttcatcttttgttcttggaaattataagtgacaattgtttctttgaat 38877460  T
Q  264 aaaagttc---ttattttcttgttatttatttttat 296  Q
    ||||||||   ||| |||||||||||||| ||||||    
T  38877461 aaaagttctctttactttcttgttatttacttttat 38877496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 4541779 - 4541817
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaatttta 345  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  4541779 gaaccaataatcccaaggcgctttttattattattttta 4541817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 2325316 - 2325284
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattatta 339  Q
    ||||||||||||||||||| |||||||||||||    
T  2325316 gaaccaataatcccgaggctctttttattatta 2325284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 4983200 - 4983143
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||| |||||||||||||||||||    ||||||||||||||||||  |||||||    
T  4983200 gacaattgtttctttgaataaaagttcatctttattttcttgttatttacctttatgt 4983143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 16076877 - 16076820
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
T  16076877 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 16076820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 92 - 283
Target Start/End: Complemental strand, 22578561 - 22578368
Alignment:
Q  92 ctgctatgttttgttatttttcagacccaaaagtccatgggttgctt-gctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctat 189  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  22578561 ctgctatgttttgttattttttagacctgaaagaccatgggttgctttgctatgtaatgtttatgccttttcttagggcttaagttagcttttaggctat 22578462  T
Q  190 aaaaagagcagccaacaaacttattattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgt 283  Q
    ||| |||||||||| || |||||||||||||||||| || |||| ||||||  | ||||| |||||||||||||||||||||||||||||||||    
T  22578461 aaatagagcagccaccagacttattattcatcttttgtttttggaaattttatgtgacaactatttctttgaataaaagttcttattttcttgt 22578368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 100 - 274
Target Start/End: Original strand, 15027335 - 15027511
Alignment:
Q  100 ttttgttat-ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagag 197  Q
    ||||||||| |||| ||||| ||||| ||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| ||||    
T  15027335 ttttgttatatttttagacctaaaagcccatgggttgcttgctatgtaatttttatgcctttttttagggcttaagttagcttttaggctataaatagag 15027434  T
Q  198 cagccaaca-aacttattattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttctta 274  Q
    |||||| || | ||||| ||||||||||| || |||||||||||  | ||||| |||||| || ||||||||||||||    
T  15027435 cagccaccataccttatgattcatcttttgttcttgggaattttatgtgacaactatttcatt-aataaaagttctta 15027511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 22577862 - 22577745
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaattttatcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagaga 406  Q
    |||||||| ||||||| |||||||||| ||||| |||| | ||   ||||||||||||||| ||| | ||| ||||||| |||||||| |||||||||||    
T  22577862 gaaccaatgatcccgatgcgctttttactattatttttcttaaatcaaaatccaaacttttcaac-tgtaatctttcagttaatcaccattaaaaagaga 22577764  T
Q  407 atcacaattacaacaactc 425  Q
    |||| ||||||||||||||    
T  22577763 atcaaaattacaacaactc 22577745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 24023932 - 24023858
Alignment:
Q  215 attcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgttattta 289  Q
    ||||||||||| || |||| ||||||  | ||||| |||||||||||||||||||||||||||||||||| ||||    
T  24023932 attcatcttttgttcttggaaattttatgtgacaactatttctttgaataaaagttcttattttcttgttcttta 24023858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 24018135 - 24018043
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaatttt-atcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaa 399  Q
    |||||||||||||||||||| ||||||||||  ||||| || |||||||| || |||||||| || |||||| |||||||||||||||| ||||    
T  24018135 gaaccaataatcccgaggcgttttttattatatattttcataaatcaaaa-tcaaaacttttcaaactttaatctttcagctaatcaccattaa 24018043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 281
Target Start/End: Complemental strand, 24018724 - 24018626
Alignment:
Q  185 gctataaaaagagcagccaacaaactt--attattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttctt 281  Q
    |||||||| |||| || || |||||||  || |||||| |||| || |||||||||||  | ||||| |||||||||||||||||||||||||||||||    
T  24018724 gctataaatagaggagtcaccaaacttgcataattcatgttttgttcttgggaattttatgtgacaactatttctttgaataaaagttcttattttctt 24018626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 298
Target Start/End: Complemental strand, 24371568 - 24371432
Alignment:
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||||||||| |||||| ||||||| |||||| | | ||||| ||| | |||||||||| || |||| | || |  | ||||||| |||||||||||    
T  24371568 gggcttaagttag-ttttagactataaatagagcatctagcaaacatatattttcatcttttgttcttggaatttataagtgacaattgtttctttgaat 24371470  T
Q  264 aaaagttct---tattttcttgttatttatttttatgt 298  Q
    |||| ||||   ||||||||||||| ||| ||||||||    
T  24371469 aaaatttctctctattttcttgttaattacttttatgt 24371432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 24825033 - 24824976
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
T  24825033 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 24824976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 29952180 - 29952225
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaattttatcaatcaaa 354  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||||    
T  29952180 gaaccaataatcccgagacgctttttattatt--ttatatcaatcaaa 29952225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 31590051 - 31590019
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattatta 339  Q
    |||||||||||| ||||||||||||||||||||    
T  31590051 gaaccaataatctcgaggcgctttttattatta 31590019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 69 - 284
Target Start/End: Complemental strand, 32796778 - 32796562
Alignment:
Q  69 gcacgaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgcttg-ctatgtaatgtttgtacctttt-ttagg 166  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||| ||||| ||||| ||||| |||||||  ||||||||||||| | |||||| |||||    
T  32796778 gcacgaccgtgcctagttccag-ctgctatgttttgttattttttagacctaaaagcccatgagttgcttttctatgtaatgtttatgccttttcttagg 32796680  T
Q  167 gcttaagttagcttttaggctataaaaagagcagccaacaaacttattattcatcttttattattgggaattttccgcgacaattattt-ctttgaataa 265  Q
    |||||||||||||||||||||||||| |||||| ||| || ||||||||| |||| ||| || ||||||||| || | ||||||||||| | |||||| |    
T  32796679 gcttaagttagcttttaggctataaatagagcaaccaccatacttattatgcatc-tttgttcttgggaattctctgtgacaattatttccattgaatca 32796581  T
Q  266 aagttcttattttcttgtt 284  Q
    |||||||||||||||||||    
T  32796580 aagttcttattttcttgtt 32796562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 69 - 293
Target Start/End: Original strand, 13168185 - 13168414
Alignment:
Q  69 gcacgaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgcttgctatgtaat---gtttgtacctttt-tta 164  Q
    ||||||||||||||||| |||  |||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||   |||| | |||||| |||    
T  13168185 gcacgaccgtgccaagttccaagctgctatgttttgtaatttt-cagacctaaaagcccatgggttgcttgctatgtaataatgtttatgccttttctta 13168283  T
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaac--ttattattcatcttttattattgggaattttccgcgacaattattt-ctttga 261  Q
    || ||||||||||||||||||||||||| |||||||||| || ||  |||| ||||||||||| || ||||||||| ||   || |||||||| | ||||    
T  13168284 ggtcttaagttagcttttaggctataaatagagcagccaccagacctttatgattcatcttttgttcttgggaattctctatgataattatttccattga 13168383  T
Q  262 ataaaagttcttattttcttgttatttatttt 293  Q
    || |||||||| ||||||||||| ||||||||    
T  13168384 atcaaagttctgattttcttgtt-tttatttt 13168414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 32796042 - 32795923
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaatttt--atcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaaga 404  Q
    ||||||||||||||||| ||||||||||||||||||||  ||| |||| || ||||||||||| || |||||| |||||||||||||||| |||||||||    
T  32796042 gaaccaataatcccgagacgctttttattattaattttgtatcgatcataa-tccaaacttttcaaactttaatctttcagctaatcaccattaaaaaga 32795944  T
Q  405 gaatcacaattacaacaactc 425  Q
    |||||| ||||||||||||||    
T  32795943 gaatcataattacaacaactc 32795923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 13168921 - 13169041
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaatttt-atcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagag 405  Q
    ||||||||||||| || || |||||||| ||||||||  |||||||||||||| || ||||| ||||||||||||||||| ||||||   ||||||||||    
T  13168921 gaaccaataatcctgatgcactttttatcattaatttacatcaatcaaaaatcaaaccttttaaacctttaaactttcagttaatcatggttaaaaagag 13169020  T
Q  406 aatcacaattacaacaactct 426  Q
    ||||| |||||||||||||||    
T  13169021 aatcaaaattacaacaactct 13169041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 17522454 - 17522388
Alignment:
Q  223 tttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgttattta 289  Q
    |||||| |||||||||||| | ||||| ||||||||||||| |||||||||||||||||||| ||||    
T  17522454 tttattcttgggaattttcagtgacaactatttctttgaatcaaagttcttattttcttgttcttta 17522388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 9414324 - 9414432
Alignment:
Q  185 gctataaaaagagcagccaacaaactt--attattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttatttt-ctt 281  Q
    |||||||| |||| | ||| |||||||  || ||||||||||| || ||||||||| |  | |||||||||||||||||||||||||||||||||| |||    
T  9414324 gctataaatagaggaaccatcaaacttgtataattcatcttttgttcttgggaattcttagtgacaattatttctttgaataaaagttcttattttactt 9414423  T
Q  282 gttatttat 290  Q
    ||| |||||    
T  9414424 gttctttat 9414432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 29682551 - 29682688
Alignment:
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||||||||| |||||| ||||||| |||| ||| | || || ||| | ||||||||||||| |||| |||| |  | |||||||||||||||| ||    
T  29682551 gggcttaagttagtttttag-ctataaatagagaagctagcagacatatattttcatcttttattcttggaaattctaagtgacaattatttctttggat 29682649  T
Q  264 aaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||||    ||||||||||| |||||| ||||||||    
T  29682650 aaaagttcttctttattttcttgctatttacttttatgt 29682688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 20222863 - 20223000
Alignment:
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttattat-tcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||||||||| |||||||||||||| |||||| | |  |||| |||  | ||||||||| || |||| |||  |  | ||||||| |||||||||||    
T  20222863 gggcttaagttag-ttttaggctataaatagagcaactagaaaacatatattctcatcttttgttcttggaaataataagtgacaattgtttctttgaat 20222961  T
Q  264 aaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||||    |||||||||||||||||| ||||||||    
T  20222962 aaaagttcatctttattttcttgttatttacttttatgt 20223000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 21238017 - 21237972
Alignment:
Q  245 gacaattatttctttgaataaaagttcttattttcttgttatttat 290  Q
    ||||||| ||||||||||| |||||||||||||||||||| |||||    
T  21238017 gacaattgtttctttgaatcaaagttcttattttcttgttctttat 21237972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 22116847 - 22116984
Alignment:
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttattat-tcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||||||||| |||||||||||||| |||||| | |  |||| |||  | ||||||||| || |||| |||  |  | ||||||| |||||||||||    
T  22116847 gggcttaagttag-ttttaggctataaatagagcaactagaaaacatatattctcatcttttgttcttggaaataataagtgacaattgtttctttgaat 22116945  T
Q  264 aaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||||    |||||||||||||||||| ||||||||    
T  22116946 aaaagttcatctttattttcttgttatttacttttatgt 22116984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 31965678 - 31965575
Alignment:
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttattat-tcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||||||||| |||||||||||||| |||||||| | ||||| |||  | ||||||||| || |||| |||| |  | ||||||| |||||||||||    
T  31965678 gggcttaagttag-ttttaggctataaatagagcagctagcaaacatatattgtcatcttttgttcttggaaattataagtgacaattgtttctttgaat 31965580  T
Q  264 aaaag 268  Q
    |||||    
T  31965579 aaaag 31965575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 26822468 - 26822506
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaatttta 345  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  26822468 gaaccaataatcccaaggcgctttttattattactttta 26822506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 210189 - 210132
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
T  210189 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 210132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 18448812 - 18448869
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
T  18448812 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 18448869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 24218757 - 24218814
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
T  24218757 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 24218814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 69 - 283
Target Start/End: Original strand, 24679974 - 24680189
Alignment:
Q  69 gcacgaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgctt-gctatgtaatgtttgtacctttt-ttagg 166  Q
    ||||||||||||||||   ||| ||||||||||||||||||||| ||||| ||||||  ||| ||||||| |||||||||||||| | |||||| |||||    
T  24679974 gcacgaccgtgccaagcttcag-ctgctatgttttgttattttttagacctaaaagtgaatgagttgctttgctatgtaatgtttatgccttttcttagg 24680072  T
Q  167 gcttaagttagcttttaggctataaaaagagcagccaacaaacttattattcatcttttattattgggaattttccgcgacaattatttctttgaataaa 266  Q
    ||| |||||||||||||||||||||| || ||||||| || |||||| | ||||||||| || ||||| |||||  | ||||| |||||||||||| |||    
T  24680073 gctcaagttagcttttaggctataaatagggcagccaccagacttatgaatcatcttttgttcttggggattttatgtgacaactatttctttgaacaaa 24680172  T
Q  267 agttcttattttcttgt 283  Q
    |||||||||||||||||    
T  24680173 agttcttattttcttgt 24680189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 24680751 - 24680796
Alignment:
Q  380 tttcagctaatcacctttaaaaagagaatcacaattacaacaactc 425  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  24680751 tttcagctaatcaccattaaaaagagaatcataattacaacaactc 24680796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 21918802 - 21918868
Alignment:
Q  109 ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagt 174  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||| | | |||| |||||||||||||    
T  21918802 ttttcagacctaaaagcccatgggttgcttgctatgtaatttttattcattttcttagggcttaagt 21918868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 1869952 - 1869886
Alignment:
Q  325 cgctttttattattaatttta-tcaatcaaaaatccaaactttttaacctttaaactttcagctaatc 391  Q
    ||||||||||||||| ||| | ||||  |||||||| ||||||| |||||||||||||||||||||||    
T  1869952 cgctttttattattattttcaatcaaataaaaatcccaactttt-aacctttaaactttcagctaatc 1869886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 2129902 - 2129985
Alignment:
Q  213 ttattcatcttttattattgggaattttccgcgacaattatttct-ttgaataaaagttctt--attttcttgttatttatttt 293  Q
    |||||||||||| | | ||||||||| |  | ||||||||||||| |||||| |||||||||  ||||||||||| ||||||||    
T  2129902 ttattcatctttgaatcttgggaattctttgtgacaattatttctattgaatcaaagttcttttattttcttgttctttatttt 2129985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 21784272 - 21784215
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
T  21784272 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 21784215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 31317 - 31206
Alignment:
Q  108 tttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagccaaca 206  Q
    ||||||||||| ||||  ||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |||||||||| ||    
T  31317 tttttcagacctaaaatcccatgggttgcttgctatgtaattttt-tgccttttcttagggcttaagttagcttttaggctataaatagagcagccacca 31219  T
Q  207 aacttattattca 219  Q
     || |||||||||    
T  31218 gacatattattca 31206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 32097 - 31940
Alignment:
Q  100 ttttgtta-tttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagag 197  Q
    |||||||| ||||||||||| ||||| ||| ||||||||||||||||||| ||| | |||||| ||| ||||||||||||||| ||||||||||| ||||    
T  32097 ttttgttactttttcagacctaaaagcccacgggttgcttgctatgtaat-tttatgccttttcttaaggcttaagttagcttataggctataaatagag 31999  T
Q  198 cagccaacaaacttattattcatcttttattattgggaattttccgcgacaattatttct 257  Q
    |||||| || || ||||||||||| ||| || || ||||||||| | ||||| |||||||    
T  31998 cagccaccagacatattattcatc-tttgttcttaggaattttcagtgacaactatttct 31940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 33465 - 33374
Alignment:
Q  108 tttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagca 199  Q
    ||||||| ||| ||||  || |||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| ||||||    
T  33465 tttttcaaacctaaaatcccttgggttgcttgctatgtaat-tttatgccttttcttagggcttaagttagcttttaggctataaatagagca 33374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 291
Target Start/End: Original strand, 12347219 - 12347444
Alignment:
Q  69 gcacgaccgtgccaag-tcccagactgctatgttttgttat-ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttag 165  Q
    |||||||||||||||| | |||| || ||||  |||||||| |||||| | | ||||| |||||||||| |||||||||||| ||| | |||||| ||||    
T  12347219 gcacgaccgtgccaaggttccaggcttctat--tttgttatgttttcataactaaaagcccatgggttgtttgctatgtaatttttatgccttttcttag 12347316  T
Q  166 ggcttaagttagcttttaggctataaaaagagcagccaaca-aacttattattcatcttttattattgggaattttccgcgacaattatttctttgaata 264  Q
    |||||||||||||||||||| |||||| |||||||||| || | |||  |||||||||| | || ||| |||||||  | ||||| ||||||  | ||||    
T  12347317 ggcttaagttagcttttaggatataaatagagcagccaccagacctttatattcatcttgtgttcttgtgaattttatgtgacaactatttccattaata 12347416  T
Q  265 aaagttctta-ttttcttgttatttatt 291  Q
    |||||||||| |||||||| | ||||||    
T  12347417 aaagttcttacttttcttgctttttatt 12347444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 291
Target Start/End: Complemental strand, 13883678 - 13883484
Alignment:
Q  100 ttttgttat-ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttttta-gggcttaagttagcttttaggctataaaaagag 197  Q
    ||||||||| |||||  ||| ||||| |||||||||||||||||| |||| ||| | |||||| || ||||||||||||||||||||||||||||  |||    
T  13883678 ttttgttatgttttcctacctaaaagcccatgggttgcttgctatataat-tttatgccttttctaagggcttaagttagcttttaggctataaatcgag 13883580  T
Q  198 cagccaaca-aacttattattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttctta-ttttcttgttatttatt 291  Q
     ||||| || | ||| | |||||| |||| || |||||||||||  | ||||| ||||||  | |||||||||||||| |||||||| | ||||||    
T  13883579 tagccaccagaccttgtgattcatattttgttcttgggaattttatgtgacaactatttccattaataaaagttcttacttttcttgctttttatt 13883484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 13883005 - 13882886
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaatttta-tcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagag 405  Q
    ||||||| |||||| |||| ||||||||||||| ||| | |||||||||||||| ||||||| || |  ||| ||||||||||| ||||  |||||||      
T  13883005 gaaccaacaatcccaaggcactttttattattattttcaatcaatcaaaaatcccaacttttaaaaccctaatctttcagctaaacaccactaaaaagca 13882906  T
Q  406 aatcacaattacaacaactc 425  Q
    ||||| ||| ||||||||||    
T  13882905 aatcaaaatcacaacaactc 13882886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 12506704 - 12506640
Alignment:
Q  73 gaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgctt 138  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||  ||||| |||||||||||||    
T  12506704 gaccgtgccaagttcca-actgctatgtttggttatttttcagacgtaaaagcccatgggttgctt 12506640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 17168881 - 17168938
Alignment:
Q  245 gacaattatttctttgaataaaagttct----tattttcttgttatttatttttatgt 298  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||    
T  17168881 gacaattatttctttgaataaaagttcttctctattttcttgttatttacttttatgt 17168938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 17174453 - 17174510
Alignment:
Q  245 gacaattatttctttgaataaaagttct----tattttcttgttatttatttttatgt 298  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||    
T  17174453 gacaattatttctttgaataaaagttcttctctattttcttgttatttacttttatgt 17174510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 21102280 - 21102223
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    |||||||||||||||||||||||||||    ||| |||||||||||||| ||||||||    
T  21102280 gacaattatttctttgaataaaagttcacctttactttcttgttatttacttttatgt 21102223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 271
Target Start/End: Complemental strand, 23793725 - 23793620
Alignment:
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||| ||| |  ||||||||| || |||| |||| |  | | ||||| |||||||||||    
T  23793725 gggcttaagttag-ttttaggctataaatagagcagctaacaaacatatattctcatcttttgttcttggaaattataagtg-caattgtttctttgaat 23793628  T
Q  264 aaaagttc 271  Q
    ||||||||    
T  23793627 aaaagttc 23793620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 11048934 - 11048975
Alignment:
Q  352 aaaaatccaaactttttaaccttt-aaactttcagctaatca 392  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  11048934 aaaaatccaaactttttaacctttgaaactttcatctaatca 11048975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 55267549 - 55267629
Alignment:
Q  213 ttattcatcttttattattgggaattttccgcgacaattatttc-tttgaataaaagttc--ttattttcttgttatttat 290  Q
    |||||||||||| | | ||||||||| ||  ||||||||||||| ||||||| |||||||  ||||||||||||| |||||    
T  55267549 ttattcatctttgaatcttgggaattctctacgacaattatttcttttgaatcaaagttcttttattttcttgttctttat 55267629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 6518407 - 6518464
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
T  6518407 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 6518464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 278
Target Start/End: Complemental strand, 27992907 - 27992738
Alignment:
Q  109 ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagccaacaa 207  Q
    |||||| ||| ||||| |||||||||||||||| ||||||  || | | |||| |||||||||||| ||||||| |||||||||| |||| ||||| ||     
T  27992907 ttttcaaacctaaaag-ccatgggttgcttgctttgtaattcttattcattttcttagggcttaagctagcttt-aggctataaatagagtagccaccag 27992810  T
Q  208 acttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttatttt 278  Q
    || ||| | |||||||||| || |||||||||||  | ||||||||||||  | ||||||||||||||||||    
T  27992809 acatatctcttcatcttttgttcttgggaattttatgtgacaattatttccatcaataaaagttcttatttt 27992738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 14826646 - 14826713
Alignment:
Q  217 tcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgtt 284  Q
    |||| ||||||| |||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||    
T  14826646 tcatattttattcttgggaattttcagtgacaactatttctttgaataagagttcttattttcttgtt 14826713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 17023274 - 17023326
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttt 293  Q
    ||||||| |||||||||||||||||||    ||||||||||||||||||||||    
T  17023274 gacaattgtttctttgaataaaagttcatctttattttcttgttatttatttt 17023326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 298
Target Start/End: Original strand, 3423 - 3562
Alignment:
Q  162 ttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttg 260  Q
    |||||||||||||||| |||||||||||||| |||||||| | ||||| ||| | |||||||||| || |||| |||| |  | ||||||| |||||| |    
T  3423 ttagggcttaagttag-ttttaggctataaatagagcagctagcaaacatatattttcatcttttgttcttggaaattataagtgacaattgtttcttag 3521  T
Q  261 aataaaagttc---ttattttcttgttatttatttttatgt 298  Q
    |||||||||||   ||||||| |||||||||| ||||||||    
T  3522 aataaaagttctctttattttattgttatttacttttatgt 3562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 4079 - 4149
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaattttatcaatc---aaaaatccaaactttttaacctt 374  Q
    |||||||||||||| | |||||||||||||||| | || ||||||   |||||||| ||||||| ||||||    
T  4079 gaaccaataatcccaatgcgctttttattattattattttcaatcgataaaaatcccaacttttcaacctt 4149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 298
Target Start/End: Original strand, 3588 - 3727
Alignment:
Q  162 ttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttg 260  Q
    |||||||||||||||| |||||||||||||| |||||||| | ||||| ||| | |||||||||| || |||| |||| |  | ||||||| |||||| |    
T  3588 ttagggcttaagttag-ttttaggctataaatagagcagctagcaaacatatattttcatcttttgttcttggaaattataagtgacaattgtttcttag 3686  T
Q  261 aataaaagttc---ttattttcttgttatttatttttatgt 298  Q
    |||||||||||   ||||||| |||||||||| ||||||||    
T  3687 aataaaagttctctttattttattgttatttacttttatgt 3727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 374
Target Start/End: Original strand, 4244 - 4314
Alignment:
Q  307 gaaccaataatcccgaggcgctttttattattaattttatcaatc---aaaaatccaaactttttaacctt 374  Q
    |||||||||||||| | |||||||||||||||| | || ||||||   |||||||| ||||||| ||||||    
T  4244 gaaccaataatcccaatgcgctttttattattattattttcaatcgataaaaatcccaacttttcaacctt 4314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 7465580 - 7465511
Alignment:
Q  134 tgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagcca 203  Q
    |||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  7465580 tgcttgctatgtaa-gtttttgccttttcttagggcttaagttagcttttaggctataaatagagcagcca 7465511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 31469887 - 31469781
Alignment:
Q  87 ccagactgctatgttttgttat-ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgta---ccttttttagggcttaagttagctttt 182  Q
    ||||||||||||  |||||||| |||||||||| ||||| || |||||||||| ||||||||| ||||||   | ||| |||||| ||||||||||||||    
T  31469887 ccagactgctat--tttgttatgttttcagacctaaaagcccttgggttgcttactatgtaat-tttgtatgtcttttcttagggattaagttagctttt 31469791  T
Q  183 aggctataaa 192  Q
    ||||||||||    
T  31469790 aggctataaa 31469781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 298
Target Start/End: Complemental strand, 24221683 - 24221543
Alignment:
Q  162 ttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttatt-attcatcttttattattgggaattttccgcgacaattatttctttg 260  Q
    |||||||||||||||| |||||| ||||||| |||||| | | ||||| |||  | |||| |||| || |||| |||| |  | ||||||||||||||||    
T  24221683 ttagggcttaagttag-ttttagactataaatagagcaactagcaaacatatacaatcattttttgttcttggaaattctaagtgacaattatttctttg 24221585  T
Q  261 aataaaagttc----ttattttcttgttatttatttttatgt 298  Q
    |||||||||||    |||||||||||||||||| ||| ||||    
T  24221584 aataaaagttcatatttattttcttgttatttactttcatgt 24221543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 15634309 - 15634355
Alignment:
Q  245 gacaattatttctttgaataaaagttctta-ttttcttgttatttat 290  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||    
T  15634309 gacaattatttctttgaatcaaagttcttatttttcttgttctttat 15634355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 15636082 - 15636128
Alignment:
Q  245 gacaattatttctttgaataaaagttctta-ttttcttgttatttat 290  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||    
T  15636082 gacaattatttctttgaatcaaagttcttatttttcttgttctttat 15636128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 13773 - 13837
Alignment:
Q  73 gaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgctt 138  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||  ||||| |||||||||||||    
T  13773 gaccgtgccaagttcca-actgctatgtttggttatttttcagacgtaaaagcccatgggttgctt 13837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 38481 - 38578
Alignment:
Q  194 agagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttc---ttattttcttgttatt 287  Q
    |||||||||| || |||||| |||||||||||| || |||| |||| |  | ||||||| |||||||||||||||||||   ||||||||||||||||    
T  38481 agagcagccatcagacttatctattcatcttttgttcttggaaattataagtgacaattgtttctttgaataaaagttctctttattttcttgttatt 38578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 298
Target Start/End: Complemental strand, 23029708 - 23029571
Alignment:
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||| ||||| |||||||||||||| |||||||| | || || ||| |||||||||||| || |||| |||| |  | ||  ||| |||||||||||    
T  23029708 gggcttatgttag-ttttaggctataaatagagcagctagcagacatatctattcatcttttgttcttggaaattataagtgaagattgtttctttgaat 23029610  T
Q  264 aaaagttc----ttattttcttgttatttatttttatgt 298  Q
    ||||||||    |||||||||||||||||| || |||||    
T  23029609 aaaagttcttctttattttcttgttatttacttctatgt 23029571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 1630 - 1698
Alignment:
Q  222 ttttattattgggaattttccgcgacaattatttct-ttgaataaaagttcttattttcttgttattta 289  Q
    ||||||||||||||||| ||   ||||||||||||  |||||||||| ||||||||||||| |||||||    
T  1630 ttttattattgggaattctctatgacaattatttccattgaataaaatttcttattttcttcttattta 1698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 168155 - 168289
Alignment:
Q  165 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 263  Q
    ||||||||||||| ||||||||||||||| ||||||| | || || ||| || ||||||||| || |||| |||| |  | ||||||||||||||| |||    
T  168155 gggcttaagttag-ttttaggctataaaa-gagcagctagcagacatatctaatcatcttttgttcttggaaattctaagtgacaattatttctttaaat 168252  T
Q  264 aaa-agttc-ttattttcttgttatttatttttatgt 298  Q
    |||   ||| |||||||||||||||||| ||||||||    
T  168253 aaattcttctttattttcttgttatttacttttatgt 168289  T

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Target: scaffold1323 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1323
Description:

Target: scaffold1323; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 1955 - 1898
Alignment:
Q  245 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 298  Q
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T  1955 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 1898  T

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