View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4187_low_4 (Length: 358)
Name: NF4187_low_4
Description: NF4187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4187_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 11544713 - 11544373
Alignment:
| Q |
1 |
cttgtatcatcgtccatggtgctgcgaaaagagactctaacaccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgttaaac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11544713 |
cttgtatcatcgtccgtggtgctgcgaaaagagactctaataccaccaatgctagcaagagttaaatggttcaattccaattgaccaggcattgttaaac |
11544614 |
T |
|
| Q |
101 |
tttcacaaaacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatacaatatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544613 |
tttcacaaaacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatacaatatta |
11544514 |
T |
|
| Q |
201 |
attattttagctaaatataaaatttacaaggaaaatagatgaatagagatttttggaagggtaaatttagaaaacaaagtgtgattaacctcctatagtt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544513 |
attattttagataaatataaaatttacaaggaaaatagatgaatagagatttttggaagggtaaatttagaaaacaaagtgtgattaacctcctatagtt |
11544414 |
T |
|
| Q |
301 |
tcttcaacaggtattgcttcaacataagagcctaaagatct |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544413 |
tcttcaacaggtattgcttcaacataagagcctaaagatct |
11544373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 24 - 341
Target Start/End: Complemental strand, 11558106 - 11557794
Alignment:
| Q |
24 |
gcgaaaagagactctaacaccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgttaaactttcacaaaacattttgaccatt |
123 |
Q |
| |
|
||||| |||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||||||||||||| | |||||||||||| || |||||| |
|
|
| T |
11558106 |
gcgaatagagactctaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgttaagcattcacaaaacatcttcaccatt |
11558007 |
T |
|
| Q |
124 |
ctctgagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatacaatattaattattttagctaaatataaaat |
223 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
11558006 |
ctatcagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatataatattaattaaattcgctaaatataaaat |
11557907 |
T |
|
| Q |
224 |
ttacaaggaaaatagatgaatagagatttttggaagggtaaatttagaaaacaaagtgtgattaacctcctatagtttcttcaacaggtattgcttcaac |
323 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11557906 |
ttacaaggaaaatagatgaatagagatatttggaagggtaaatttagaagacaa-----gattaacctcctatagtttcttcaacaggtattgcttcaac |
11557812 |
T |
|
| Q |
324 |
ataagagcctaaagatct |
341 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
11557811 |
attagagcctaaagatct |
11557794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 12064319 - 12064468
Alignment:
| Q |
24 |
gcgaaaagagactctaa-caccaccaatgctagcaagagttaaatggttcaatttcaattgaccaggcattgttaaactttcacaaaacattttgaccat |
122 |
Q |
| |
|
||||| ||||||||||| | |||||||||||| ||||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
12064319 |
gcgaagagagactctaaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgttaagcattcacaaaacattttgaccat |
12064418 |
T |
|
| Q |
123 |
tctctgagcaagctttatcacactattcctcccttcaagtgtttggatca |
172 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12064419 |
tctatcagcaagctttatcacactattcctcccttcaagtgtttggatca |
12064468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University