View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4187_low_5 (Length: 353)
Name: NF4187_low_5
Description: NF4187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4187_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 70 - 345
Target Start/End: Complemental strand, 42256386 - 42256111
Alignment:
| Q |
70 |
ggtttatattatattatcatacaattacttttggttgttgtttatcttcacatgctggttgaagtcatcaa-tatagaatattaattacatgattcttgt |
168 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |
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| T |
42256386 |
ggtttatattatattatcgtacaattacttttggttgttgtttatcttcacatgctggttggagtcatcaaatatataatattaattacatgattcttgt |
42256287 |
T |
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| Q |
169 |
gatattggcttatttgaatcgagctagacgaatataagagaatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattcatctttgt |
268 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42256286 |
gatattggcttatttgaattgagctagacgaatataagggaatttgagaaattagtagcatcttaaagaactttaaaatggtagatt-attcatctttgt |
42256188 |
T |
|
| Q |
269 |
ggattatcattatttgaaagaaatattgtgatctttattctcactttgtggactaattggtcattgttgtctgtgct |
345 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
42256187 |
ggattatcattatttgaaagaaatattgtggtctttattctcactttgtggactaattgatcattgttgtttgtgct |
42256111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 70 - 345
Target Start/End: Complemental strand, 19934805 - 19934526
Alignment:
| Q |
70 |
ggtttatattatattatcatacaattacttttggttgttgtttatcttcacatgctggttgaagtcatcaa-tatagaatatta---attacatgattct |
165 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| |
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| T |
19934805 |
ggtttatattatattatcgtacaattacttttggttgttgtttatcttcacatgctggttggagtcatcaaatatagaatattattaattacatgattct |
19934706 |
T |
|
| Q |
166 |
tgtgatattggcttatttgaatcgagctagacgaatataagagaatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattcatctt |
265 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19934705 |
tgtgatattggcttatttgaattgagctagacgaatataagggaatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattgatctt |
19934606 |
T |
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| Q |
266 |
tgtggattatcattatttgaaagaaatattgtgatctttattctcactttgtggactaattggtcattgttgtctgtgct |
345 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||| | |||||| |
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| T |
19934605 |
tgtggattatcattatttgaaagaaatattgttgtctttattctcattttgtggactaattgatcattgttttttgtgct |
19934526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 42256465 - 42256410
Alignment:
| Q |
18 |
caatttgaggctaaatttgatcagtagctattttgagccaaggaaaagtccaggtt |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42256465 |
caatttgaggctaaatttgatcagtagctattttgagccaaggaaaagtccaggtt |
42256410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 19934884 - 19934829
Alignment:
| Q |
18 |
caatttgaggctaaatttgatcagtagctattttgagccaaggaaaagtccaggtt |
73 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19934884 |
caatttgaggataaatttgatcagtagctattttgagccaaggaaaagtccaggtt |
19934829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 70 - 345
Target Start/End: Complemental strand, 6670947 - 6670679
Alignment:
| Q |
70 |
ggtttatattatattatcatacaattacttttggttgttgtttatcttcacatgctggttgaagtcatcaa-tatagaatattaattacatgattcttgt |
168 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
6670947 |
ggtttatattatattatcgtacaattacttttggttgttgtttatcttcacatgctggttggagtcatcaaatatagaatattaattacatgattcttgt |
6670848 |
T |
|
| Q |
169 |
gatattggcttatttgaatcgagctagacgaatataagagaatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattcatctttgt |
268 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6670847 |
gatattggcttatttgaattgagctagacgaatataagggaatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattcatc----- |
6670753 |
T |
|
| Q |
269 |
ggattatcattatttgaaagaaatattgtgatctttattctcactttgtggactaattggtcattgttgtctgtgct |
345 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||| | |||||||||| |||||| |
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| T |
6670752 |
---ttatcattatttgaaagaaatattgtggtctttattctcactttgtagactaacttatcattgttgtttgtgct |
6670679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 165 - 333
Target Start/End: Complemental strand, 5695628 - 5695462
Alignment:
| Q |
165 |
ttgtgatattggcttatttgaatcgagctagacgaatataagagaatttgagaaattagtagcatcttaaagaactttaaaatggtagattaattcatct |
264 |
Q |
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|
||||||||||||||| || |||| ||||| ||| |||||| | ||| | |||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
5695628 |
ttgtgatattggcttgttagaattgagctggacaaatatacgg--attcgggaaattagtagcatcttaaagaacttcaaattggtagattaattcatct |
5695531 |
T |
|
| Q |
265 |
ttgtggattatcattatttgaaagaaatattgtgatctttattctcactttgtggactaattggtcatt |
333 |
Q |
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||||||||||| || ||| || | | |||| | ||||||||||||||||||||| |||||| ||||| |
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| T |
5695530 |
ttgtggattattgttgtttcaatgtattattatagtctttattctcactttgtggattaattgatcatt |
5695462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 6671026 - 6670971
Alignment:
| Q |
18 |
caatttgaggctaaatttgatcagtagctattttgagccaaggaaaagtccaggtt |
73 |
Q |
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|||||||||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
6671026 |
caatttgaggctaaatattattagtagctattttgagccaaggaaaagtccaggtt |
6670971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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