View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4187_low_7 (Length: 221)

Name: NF4187_low_7
Description: NF4187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4187_low_7
NF4187_low_7
[»] chr5 (7 HSPs)
chr5 (18-211)||(6140790-6140982)
chr5 (25-104)||(9884522-9884601)
chr5 (25-104)||(9886758-9886837)
chr5 (154-211)||(9886892-9886949)
chr5 (29-84)||(6134200-6134255)
chr5 (24-84)||(6134056-6134116)
chr5 (154-206)||(9884431-9884483)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 6140790 - 6140982
Alignment:
Q  18 agaagatcattccaaacaatatatattttaccgttccgtttgaattagttgcatgataagtgagttacaaaaaatcagttatata--ttgtctaccgnnn 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||       
T  6140790 agaagatcattccaaacaatatatattttaccgttccgtttgaattagttgcatgataagtgagttacaaaaaatcacttatatatgttatctaccgttt 6140889  T
Q  116 nnnnatattgttatcttatgcgatcaccnnnnnnnnnnatgtgataacttttgttacaaaagattttctatcatattttactttgcaatgatgatg 211  Q
        |||||||| |||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6140890 ttttatattgttgtcttatgcgatcacc---tttttttatgtgataacttttgttacaaaagattttctatcatattttactttgccatgatgatg 6140982  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 9884601 - 9884522
Alignment:
Q  25 cattccaaacaatatatattttaccgttccgtttgaattagttgcatgataagtgagttacaaaaaatcagttatatatt 104  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  9884601 cattcaaaacattatatattctaccgttccgtttgaattagttgcatgctaagtgaattacaaaaaatcacttatatatt 9884522  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 9886758 - 9886837
Alignment:
Q  25 cattccaaacaatatatattttaccgttccgtttgaattagttgcatgataagtgagttacaaaaaatcagttatatatt 104  Q
    ||||| ||||| |||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  9886758 cattcaaaacattatatattctaccgtgccgtttgagttagttgcatgctaagtgagttacaaaaaatcacttatatatt 9886837  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 9886892 - 9886949
Alignment:
Q  154 atgtgataacttttgttacaaaagattttctatcatattttactttgcaatgatgatg 211  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  9886892 atgtgatatcttttattacaaaagattttctatcatcttttactttgtaatgatgatg 9886949  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 6134200 - 6134255
Alignment:
Q  29 ccaaacaatatatattttaccgttccgtttgaattagttgcatgataagtgagtta 84  Q
    ||||||||||||||||||||||||  |||||||| |||| ||||||||||||||||    
T  6134200 ccaaacaatatatattttaccgttttgtttgaatcagttacatgataagtgagtta 6134255  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 6134056 - 6134116
Alignment:
Q  24 tcattccaaacaatatatattttaccgttccgtttgaattagttgcatgataagtgagtta 84  Q
    |||| ||||||| |||| |||||||||||  |||||||| |||||||| ||||||||||||    
T  6134056 tcatcccaaacagtatacattttaccgttttgtttgaatcagttgcattataagtgagtta 6134116  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 9884483 - 9884431
Alignment:
Q  154 atgtgataacttttgttacaaaagattttctatcatattttactttgcaatga 206  Q
    |||||||||||||| ||||||||| ||||| ||||| |||||||||| |||||    
T  9884483 atgtgataacttttattacaaaagtttttcgatcatcttttactttgtaatga 9884431  T

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