View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_high_4 (Length: 369)
Name: NF4188_high_4
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 60 - 369
Target Start/End: Complemental strand, 2772637 - 2772326
Alignment:
| Q |
60 |
aaatgagagtcaatgacactgccgaaatatacctttcttgatgtttgtttatctaaaactattgttgtt---ttcaaagtgagcgatttttagttatgaa |
156 |
Q |
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| T |
2772637 |
aaatgagagtcaatgacactgcccaaatatacctttcttgatgtttgtttatctaaaactattgttgttgttttcaaagtgagcgatttttagttatgaa |
2772538 |
T |
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| Q |
157 |
taggttgaattcgaaaatattattaaaaaagagtaaatcagaaattgaaacagttaccgctatgcacatttcatacgagtgcaagaagaagcatatctat |
256 |
Q |
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| T |
2772537 |
taggttgaattcgaaaatattattaaaaa-gagtaaatcagaaattgaaacagttaccgctatgcacatttcatacgagtgcaagaagaagcatatcaat |
2772439 |
T |
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| Q |
257 |
gatatagaattgaaaacgaaaccttcagctaactttgatagctaattagaaccaaccagactttgaaataggttctagtgtaaaggcagaagagacggca |
356 |
Q |
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| T |
2772438 |
gatatagaattgaaaacgaaaccttcagctaactttgatagctaattagaaccaaccagactttgaaataggttctagtgtaaaggcagaagagacggca |
2772339 |
T |
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| Q |
357 |
ttaggttgtggcc |
369 |
Q |
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| T |
2772338 |
ttaggttgtggcc |
2772326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 2773088 - 2773058
Alignment:
| Q |
10 |
agatgaacattgaaagaggctgtcacaaacc |
40 |
Q |
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| T |
2773088 |
agatgaacattgaaagaggctgtcacaaacc |
2773058 |
T |
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