View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4188_high_8 (Length: 240)
Name: NF4188_high_8
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1097401 - 1097177
Alignment:
| Q |
1 |
atttttgttattttaatnnnnnnntattttttcgaatccaacaagggcttgccatcacaacatttttaatacatgtcagcgtttnnnnnnnn--tggaaa |
98 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
1097401 |
atttttgttattttaataaaaatatattttttcgaatccaacaagggcttgccatcacatcatttttaatacatgtcagcgtttaaaaaaaaaatggaaa |
1097302 |
T |
|
| Q |
99 |
attggataacgaaaatgagtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgtatctaatagactcatgtatgcttataaatgcttgaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1097301 |
attggataacgaaaatgagtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgtatctaatagactcatgtatgcttataaatgcttgaa |
1097202 |
T |
|
| Q |
199 |
tgaatataattatgtgataatcatg |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1097201 |
tgaatataattatgtgataatcatg |
1097177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 1128941 - 1128817
Alignment:
| Q |
113 |
atgagtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgtat--------------ctaatagactcatgtatgcttataaatgcttgaa |
198 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |
|
|
| T |
1128941 |
atgagtggcattgtagccacacaacaatgtattaggttaatgtaatttgtatgcctaaaattctatctaatagactcatgtatgcttataaatgcataaa |
1128842 |
T |
|
| Q |
199 |
tgaatataattatgtgataatcatg |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1128841 |
tgaatataattatgtgataatcatg |
1128817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 1118251 - 1118195
Alignment:
| Q |
170 |
agactcatgtatgcttataaatgcttgaatgaatataattatgtgataatcatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1118251 |
agactcatgtatgcttataaatgcatgaatgaatataattatgtgataatcatgatg |
1118195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 1102912 - 1102792
Alignment:
| Q |
113 |
atgagtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgta--------------tctaatagactcatgtatgcttataaatgcttgaa |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| | |
|
|
| T |
1102912 |
atgagtggcattgtagccacacaaaaatgtattaggttgatgtaatttgtatgcctagaattgtctctaatagactcatgtatgcttacaaatgc----a |
1102817 |
T |
|
| Q |
199 |
tgaatataattatgtgataatcatg |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1102816 |
tgaatataattatgtgataatcatg |
1102792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 1118346 - 1118298
Alignment:
| Q |
116 |
agtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgtat |
164 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1118346 |
agtggcattgtagccacacaaaaatgtattaggttaatgtaatttgtat |
1118298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 1087249 - 1087190
Alignment:
| Q |
159 |
ttgtatctaatagactcatgtatgcttataaatgcttgaatgaatataattatgtgataatcat |
222 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
1087249 |
ttgtatctaacagactcatgtatgcttataaatgc----attaatataattatgtgataatcat |
1087190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 1087309 - 1087258
Alignment:
| Q |
113 |
atgagtggcatcgtagccacacaaaaatgtattaggttaatgtaatttgtat |
164 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
1087309 |
atgagtggcattgtagcaacacaaaaaaatattaggttaatgtaatttgtat |
1087258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University