View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_low_1 (Length: 535)
Name: NF4188_low_1
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 201 - 481
Target Start/End: Original strand, 47268372 - 47268651
Alignment:
| Q |
201 |
aatgctataaagtaaatatagataatatgaaagacactgtgagagaaagaggggtaactatggaaataacatggtctcgctccctttcttcgcacataag |
300 |
Q |
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| T |
47268372 |
aatgctataaagtaaatatagataacatgaaagacactttgagagaaagaggggtaactatggaaataacatggcctctctccctttcttcgcacatcag |
47268471 |
T |
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| Q |
301 |
aggagactcaaaaagtgggtgacattttactgatgctccaaacgatagaaataagccatctctttgctttttctctcttcaatatctctctcgctgcaaa |
400 |
Q |
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| T |
47268472 |
aggagactcaaaaagtgggtggcattttact-atgctccaaacgatagaaataagccatctctttgctttttctctcttcaatatctctctcgcagcaaa |
47268570 |
T |
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| Q |
401 |
ctctcacctaccaaaccaactgtaagtgtgcttaacaatgtgcgtatatgaaatttacaaggcaattaaacttgatctaaa |
481 |
Q |
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| T |
47268571 |
ctctcgcctaccaaacgaactgtaagtgtgcttaacaatgtgcgtatatgaaatttacaaggcaattaaacttgatctaaa |
47268651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 47268158 - 47268230
Alignment:
| Q |
18 |
agatgtgtgataagagacgacaatctttaaagttgtatctttgttgttactcctccaaactctcaacactttg |
90 |
Q |
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| T |
47268158 |
agatgtgtgataagagacgacaatctttaaagttgtatctttgttggtactcctccaaactctcaacactttg |
47268230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 47268310 - 47268351
Alignment:
| Q |
170 |
cacacacttttatgtgtttttagaacgtaacaatgctataaa |
211 |
Q |
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| T |
47268310 |
cacacacttttatgtgtttttagaacgtaacaatgctataaa |
47268351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 535
Target Start/End: Original strand, 47268693 - 47268725
Alignment:
| Q |
503 |
tgaaaaaattgataacactcaaactactaatct |
535 |
Q |
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| T |
47268693 |
tgaaaaaattgataacactcaaactactaatct |
47268725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 42596666 - 42596786
Alignment:
| Q |
201 |
aatgctataaagtaaatatagataatatgaaagacactgtgagagaaagaggggtaactatggaaataacatggtctcgctccctttcttcgcacataag |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
42596666 |
aatgctataaagtaagtatagataatatgaaagacactgtgagagaaagaggggtaactatggaaataacatggtctctctccctttcttcgcacatcag |
42596765 |
T |
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| Q |
301 |
aggagactcaaaaagtgggtg |
321 |
Q |
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| T |
42596766 |
agaagactcaaaaagtgggtg |
42596786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 42596604 - 42596645
Alignment:
| Q |
170 |
cacacacttttatgtgtttttagaacgtaacaatgctataaa |
211 |
Q |
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| T |
42596604 |
cacacacttttatgtgtttttagaacgtaacaatgctataaa |
42596645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 42596814 - 42596856
Alignment:
| Q |
323 |
cattttactgatgctccaaacgatagaaataagccatctcttt |
365 |
Q |
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| T |
42596814 |
catttcactgatgctccaaacgatagaaataagtcatctcttt |
42596856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 16871206 - 16871154
Alignment:
| Q |
269 |
acatggtctcgctccctttcttcgcacataagaggagactcaaaaagtgggtg |
321 |
Q |
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| T |
16871206 |
acatggtctctctccctttcttcgcacatcagaggagactcaaaaagtgggtg |
16871154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 16871304 - 16871263
Alignment:
| Q |
170 |
cacacacttttatgtgtttttagaacgtaacaatgctataaa |
211 |
Q |
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| T |
16871304 |
cacacacttttatgtgattttagaacgtaacaatgctataaa |
16871263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 16871123 - 16871077
Alignment:
| Q |
368 |
tttttctctcttcaatatctctctcgctgcaaactctcacctaccaaac |
416 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
16871123 |
tttttctctcttcaatatc--tctcgcatcaaactctcacctaccaaac |
16871077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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