View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_low_12 (Length: 237)
Name: NF4188_low_12
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 3563956 - 3564174
Alignment:
| Q |
3 |
cacagcaggtgggctatgttgggagccttgggatgtgtcttccctgagctcctagctcgcaatggtgtcaaattcggtgaggctgtttggttcaaggcag |
102 |
Q |
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||||| || |||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
3563956 |
cacagtagatgggctatgttgggtgccttgggatgtgtcttccctgagctcttatctcgcaatggtgtcaaattcggcgaggctgtatggttcaaggcag |
3564055 |
T |
|
| Q |
103 |
gatcccaaatttttagtgagggtgggctcgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatatgggctgtccaagttatctt |
202 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3564056 |
gatcccaaatttttagtgagggtgggcttgactacttgggtaacccaagtctagtccatgcacaaagcatccttgctatatgggctgtccaagttatctt |
3564155 |
T |
|
| Q |
203 |
aatgggagctgtcgagggt |
221 |
Q |
| |
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|||||| ||||| |||||| |
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| T |
3564156 |
aatgggtgctgttgagggt |
3564174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3572649 - 3572869
Alignment:
| Q |
1 |
ttcacagcaggtgggctatgttgggagccttgggatgtgtcttccctgagctcctagctcgcaatggtgtcaaattcggtgaggctgtttggttcaaggc |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| || ||||||||||| |
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| T |
3572649 |
ttcacagtaggtgggctatgttgggagccttgggatgtgtcttccctgagctcttggctcgcaatggtgttaaattcggtgaggccgtgtggttcaaggc |
3572748 |
T |
|
| Q |
101 |
aggatcccaaatttttagtgagggtgggctcgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatatgggctgtccaagttatc |
200 |
Q |
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|||||| ||||| |||||||||||||| || ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3572749 |
aggatctcaaatctttagtgagggtggacttgactacttgggaaatccaagtctagtccatgcacaaagcatccttgctatatgggctgtccaagttatc |
3572848 |
T |
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| Q |
201 |
ttaatgggagctgtcgagggt |
221 |
Q |
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|||||||| ||||| |||||| |
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| T |
3572849 |
ttaatgggtgctgttgagggt |
3572869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 3569604 - 3569822
Alignment:
| Q |
3 |
cacagcaggtgggctatgttgggagccttgggatgtgtcttccctgagctcctagctcgcaatggtgtcaaattcggtgaggctgtttggttcaaggcag |
102 |
Q |
| |
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||||| || |||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| || ||||||||||||| |
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| T |
3569604 |
cacagtagatgggctatgttgggtgccttgggatgtgtcttccctgagctcttatctcgcaatggtgtacaattcggtgaggccgtgtggttcaaggcag |
3569703 |
T |
|
| Q |
103 |
gatcccaaatttttagtgagggtgggctcgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatatgggctgtccaagttatctt |
202 |
Q |
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|||||||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
3569704 |
gatcccaaatctttagtgagggtggacttgactacttgggtaacccaagtctagtccatgcacaaagcatccttgctatatgggcagtccaagttatctt |
3569803 |
T |
|
| Q |
203 |
aatgggagctgtcgagggt |
221 |
Q |
| |
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|||||| || || |||||| |
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| T |
3569804 |
aatgggcgccgtggagggt |
3569822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 3575935 - 3576153
Alignment:
| Q |
3 |
cacagcaggtgggctatgttgggagccttgggatgtgtcttccctgagctcctagctcgcaatggtgtcaaattcggtgaggctgtttggttcaaggcag |
102 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||||||||||||||| |||||| | ||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
3575935 |
cacagtagatgggctatgttaggagctttgggatgtgtcttccccgagctcttgtctcgcaatggtgtgaaattcggcgaggctgtgtggttcaaggcag |
3576034 |
T |
|
| Q |
103 |
gatcccaaatttttagtgagggtgggctcgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatatgggctgtccaagttatctt |
202 |
Q |
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|||| ||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3576035 |
gatctcaaatctttagtgagggaggacttgactacttgggtaacccaagcctagtccacgcacaaagtatccttgctatatgggctgtccaagttatctt |
3576134 |
T |
|
| Q |
203 |
aatgggagctgtcgagggt |
221 |
Q |
| |
|
|||||||||||| |||||| |
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| T |
3576135 |
aatgggagctgttgagggt |
3576153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 3585274 - 3585072
Alignment:
| Q |
12 |
tgggctatgttgggagccttgggatgtgtcttccctgagctcctagctcgcaatggtgtcaaattcggtgaggctgtttggttcaaggcaggatcccaaa |
111 |
Q |
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|||||||||||||| ||||| |||||||||||||| || ||| | |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| |
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| T |
3585274 |
tgggctatgttgggtgccttaggatgtgtcttcccagaactcttggctcgcaatggtgtgaaattcggtgaggctgtgtggtttaaggcaggatctcaaa |
3585175 |
T |
|
| Q |
112 |
tttttagtgagggtgggctcgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatatgggctgtccaagttatcttaatgggagc |
211 |
Q |
| |
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| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3585174 |
tctttagtgagggtggacttgactacttgggtaacccaagcctagtccatgcacaaagcatccttgctatttgggctgtccaagttatcttaatgggagc |
3585075 |
T |
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| Q |
212 |
tgt |
214 |
Q |
| |
|
||| |
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| T |
3585074 |
tgt |
3585072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 3577896 - 3578009
Alignment:
| Q |
108 |
caaatttttagtgagggtgggctcgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatatgggctgtccaagttatcttaatgg |
207 |
Q |
| |
|
||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||||||| |
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| T |
3577896 |
caaatctttagtgatggagggcttgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatttgggttgtcctagctatcttaatgg |
3577995 |
T |
|
| Q |
208 |
gagctgtcgagggt |
221 |
Q |
| |
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||||||| |||||| |
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| T |
3577996 |
gagctgttgagggt |
3578009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 13275969 - 13276100
Alignment:
| Q |
90 |
tggttcaaggcaggatcccaaatttttagtgagggtgggctcgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatatgggctg |
189 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||||| ||||| ||||| |||||||| || || || ||||||||||||||||| |||||||| |
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| T |
13275969 |
tggttcaaggccaggtcccaaatctttagtgagggtgggctagactatttgggcaacccaagtcttgtacatgcacaaagcatccttgccatatgggcct |
13276068 |
T |
|
| Q |
190 |
tccaagttatcttaatgggagctgtcgagggt |
221 |
Q |
| |
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|||||||||||| ||||| ||||| |||||| |
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| T |
13276069 |
gccaagttatcttgatgggtgctgttgagggt |
13276100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 38356977 - 38357182
Alignment:
| Q |
9 |
aggtgggctatgttgggagccttgggatgtgtcttccctgagctcctagctcgcaatggtgtcaaattcggtgaggctgtttggttcaaggcaggatccc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| | ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
38356977 |
aggtgggctatgttgggagccttgggatgtgttttcccagagcttttgtctcgcaatggtgttaaattcggtgaggctgtatggttcaaggccggatccc |
38357076 |
T |
|
| Q |
109 |
aaatttttagtgagggtgggctcgactacttgggtaacccaagcctagtccacgcacaaagcatccttgctatatgggctgtccaagttatcttaatggg |
208 |
Q |
| |
|
| || ||||| |||||||| || |||||||||||||||||||| | ||||| || || ||||| ||||| || |||||| |||||||||||| ||||| |
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|
| T |
38357077 |
agatctttagcgagggtggacttgactacttgggtaacccaagtttggtccatgctcagagcattcttgccatctgggctacccaagttatcttgatggg |
38357176 |
T |
|
| Q |
209 |
agctgt |
214 |
Q |
| |
|
||||| |
|
|
| T |
38357177 |
cgctgt |
38357182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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