View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_low_13 (Length: 227)
Name: NF4188_low_13
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 13601157 - 13601248
Alignment:
| Q |
18 |
ccatttgatcaagttctcttcctagaaagaagtcatcaaagaaattgttagagcttgtaatttataaacaggacaaatgtttgtcattgatc |
109 |
Q |
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| T |
13601157 |
ccatttaatcaagttctcttcctagaaagaagtcatcaaagaaactgttagagcttataatttatacacaggacaaatgtttgtcattgatc |
13601248 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 13601289 - 13601344
Alignment:
| Q |
161 |
ctcatactctcgatcttgatcaggctcatatgttttgtattcccatttcatctcac |
216 |
Q |
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| T |
13601289 |
ctcatactctcgatcctgatcaggctcatatgttttgtattcccatttcatgtcac |
13601344 |
T |
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