View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_low_14 (Length: 211)
Name: NF4188_low_14
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 6337969 - 6338151
Alignment:
| Q |
14 |
ataagaaggagtgagagtgtgagacggagaagaaaa-aatgaaataacagatttaaatataaaaataagccaatcattctacaagtaacaatcaactgat |
112 |
Q |
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| T |
6337969 |
ataagaaggagtgagagtgtgagacggagaagaaaaaaatgaaataacagatttaaatataaaaataagccaatcattctacaagtaacaatcaactgat |
6338068 |
T |
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| Q |
113 |
actgaacacatactccgtaggatgtggaaccattgcccgaaccgactgtttatggtttttaagagctaacattgttttacctg |
195 |
Q |
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| T |
6338069 |
actgaacacatactccgtaggatgtggaaccattgcccgaaccgactgtttatggtttttaagagctaacattgttttacctg |
6338151 |
T |
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Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 14192665 - 14192776
Alignment:
| Q |
84 |
aatcattctacaagtaacaatcaactgatactgaacacatactccgtaggatgtggaaccattgcccgaaccgactgtttatggtttttaagagctaaca |
183 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||| ||||| |||| |||||||||| |||||| | ||| |
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| T |
14192665 |
aatcgttctacaagtaacaatcaactgatattgaacacatactctttaggatgctgagccattgctcgaacagactttttatggtttgtaagagttgaca |
14192764 |
T |
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| Q |
184 |
ttgttttacctg |
195 |
Q |
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| T |
14192765 |
ttgttttacctg |
14192776 |
T |
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