View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_low_3 (Length: 457)
Name: NF4188_low_3
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 96 - 450
Target Start/End: Complemental strand, 40043221 - 40042867
Alignment:
| Q |
96 |
gtctaaagatattatctatattctttcatgtgtcttgttacccctgtttgctctgttctctttcaatttcttgaggcacaagcaacaaaataacaaagac |
195 |
Q |
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| T |
40043221 |
gtctaaagatattatctatattctttcatgtgttttgtttcccctgtttgctctgttctctttcaatttcttgaggcacaagcaacaaaataacaaagac |
40043122 |
T |
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| Q |
196 |
aaaagaaagcttccaccaggtgaaatgggatttccattgataggagagaccatggaattcttcaatgctcaaaggagaaacaaattgtatgaagattttg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40043121 |
aaaagaaagcttccaccaggtgaaatgggatttccattgataggagagaccatggaattcttcaatgctcaaaggagaaacaaattgtatgaagattttg |
40043022 |
T |
|
| Q |
296 |
ttcatcctcgaatcacgaaacacggaaagatcttcaaaacaaggatcatagggtcaccaactgtgatagtaaatggagctgaggcaaataagtttatttt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40043021 |
ttcatcctcgaatcacgaaacacggaaagatcttcaaaacaaggatcatagggtcaccaactgtgatagtaaatggagctgaggcaaataagtttatttt |
40042922 |
T |
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| Q |
396 |
gtccaatgagttcaagctggtaaaaagctcttggccttcttcctcagttcatctc |
450 |
Q |
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| T |
40042921 |
gtccaatgagttcaagctggtaaaaagctcttggccttcttcctcagttcatctc |
40042867 |
T |
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