View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_low_4 (Length: 454)
Name: NF4188_low_4
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_low_4 |
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| [»] chr7 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 30 - 454
Target Start/End: Complemental strand, 11380244 - 11379824
Alignment:
| Q |
30 |
caatcagattcagaatttcttttcgaggaaaatcaaattcagattctctactgtctgtttgtgtttgttgcaatttcttacgtagttttcaattctttgt |
129 |
Q |
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| T |
11380244 |
caatcagattcaaaatttcttttcgaggaaaatcatattcagattctctactgtctgtttgtgtttgttgcaatttcttacgtagttttcaattctttgt |
11380145 |
T |
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| Q |
130 |
tgcttcaattgtcaattttacaagattcaatctaatgggaacacatttgcattgtacaaacacaagtattttaaaaaagttaacacaacaagaaaggtct |
229 |
Q |
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| T |
11380144 |
tgcttcaattgtcaatcttacaagattcaatctaatgggaacacatttgcattgtacacacacaagtattttaataaagttaacacaacaagaaaggtct |
11380045 |
T |
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| Q |
230 |
aatatc-aaataatgaaataaaagcacagtgaaaaacatttccatttatccataacatatgag-caaaaaattcaacgttctttaatttgattttactcg |
327 |
Q |
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| T |
11380044 |
aatatcaaaataatgaaataaaagcacagtgaaaaacatttcca-ttatccataacatatgagccaaaaaattcaacgttcttta-----attttactcg |
11379951 |
T |
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| Q |
328 |
ataataatgttaataattgagttaattaatctacatgatttccannnnnnnnaacagccaatattttattacagctacatctgcacgagacgcaaagagc |
427 |
Q |
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| T |
11379950 |
ataataatgttaataattgagttaattaatctacatgatttccattttttttaacagccaatattttattacggctacatctgcacgagacgcaaagagc |
11379851 |
T |
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| Q |
428 |
aagcacacagaacagaacagaacaaaa |
454 |
Q |
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| T |
11379850 |
aagcacacaaaacagaacaaaacaaaa |
11379824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 11452300 - 11452187
Alignment:
| Q |
57 |
gaaaatcaaattcagattctcta--ctgtctgtttgtgtttgttgcaatttcttacgtagttttcaat--tctttgttgcttcaattgtcaattttacaa |
152 |
Q |
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| T |
11452300 |
gaaaataagattcagattctctaatctgtttgtttgtgtttgttgcaatttcttatgcagttttcaattatatttgttgctgcaattttcaatcttacaa |
11452201 |
T |
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| Q |
153 |
gattcaatctaatg |
166 |
Q |
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| T |
11452200 |
gattcaatctaatg |
11452187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 11376043 - 11375948
Alignment:
| Q |
353 |
ttaatctacatgatttccannnnnnnnaacagccaatattttattacagctacatctgcacgagacgcaaagagcaagcacacagaacagaacagaaca |
451 |
Q |
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| T |
11376043 |
ttaatctacatgatttccatttgttttaacagccaa-attttattatcgctacatctgcacaagacaca--gagcaagcacacagaacagaacaaaaca |
11375948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 35400729 - 35400634
Alignment:
| Q |
54 |
gaggaaaatcaaattcagattctctact--gtctgtttgtgtttgttgcaatttcttacgtagttttcaat--tctttgttgcttcaattgtcaat |
145 |
Q |
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| T |
35400729 |
gaggaaaaccatatccaaattctctactatgtttgtttgtgtttgttgcaatttcttatgcagttttcaataatctttgttgctgcaattttcaat |
35400634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 454
Target Start/End: Complemental strand, 17658648 - 17658595
Alignment:
| Q |
401 |
gctacatctgcacgagacgcaaagagcaagcacacagaacagaacagaacaaaa |
454 |
Q |
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| T |
17658648 |
gctacatctgcacaagacgcacagagcaagcaaacaaaacaaaacaaaacaaaa |
17658595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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