View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_low_7 (Length: 363)
Name: NF4188_low_7
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 47268719 - 47269075
Alignment:
| Q |
1 |
ctaatctatttaggttaaaatttgcgagtgcaatccatgtttactttttaggtaatccaaaagagaaagaagttgcttacccgatcatctgattcatcaa |
100 |
Q |
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| T |
47268719 |
ctaatctatttaggttaaaatttgcgagtgcaatccatgtttactttttaggtaatccaaaagagaaagaagttacttacccgatcatctgattcatcaa |
47268818 |
T |
|
| Q |
101 |
attctagcaaatagcaactaaattcaaccaattcaattctactacacacatacaagtcatgaatatcgatacaaacaaatctaaaccatctcatttcagc |
200 |
Q |
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| T |
47268819 |
attctagcaaatagcaactaaattcaaccaattcaattctactacacacatacaagtcatgaatatcgatacaaacaaatctaaaccatctcatttcagc |
47268918 |
T |
|
| Q |
201 |
tgctagctgagaaaatgcaaatgcatttcctagaaaacatgtacataga---caccatatatcatgtttgaagttgaccatgattagttattaagatatt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47268919 |
tgctagctgagaaaatgcaaatgcatttcctagaaaacatgtacatagacaccaccatatatcatgtttgaagttgaccatgattagttattaagatatt |
47269018 |
T |
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| Q |
298 |
tgacggactaaattgagaaaaatactgctcaaacagatgcccttctcttgtctctgc |
354 |
Q |
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| T |
47269019 |
tgacggactaaattgagaaaaatactgctcaaacagatgcccttctcttgtctctgc |
47269075 |
T |
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