View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_low_8 (Length: 307)
Name: NF4188_low_8
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 4642166 - 4641889
Alignment:
| Q |
19 |
ttgtctttgtaagaacatactctgccgttgtttcaaagattaaaccgaattatgtttcagtagcatatgggattgtactttgtaattgggagtcttcctg |
118 |
Q |
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| T |
4642166 |
ttgtctttgtaagaacatactctgccgttgtttcaaagattaaaccgaattatgtttcaggagcatatgggattgtactttgtaattggaagtcttcctg |
4642067 |
T |
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| Q |
119 |
ttccttatgcacatgatcttaggaactttacatatagttttgtcaagnnnnnnngtgaggatgatgcacaataagattttttggtattaattattttgaa |
218 |
Q |
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| T |
4642066 |
ttccttatgcacatgatcttaggaactttacatatagttttgtcaagtttttttgtgaggatgatgcacaataagattttttggtattaattattttgaa |
4641967 |
T |
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| Q |
219 |
aatcatcatctatatcaaacaaatattaccgtgcatctatgatattctaacaagttagtatttttgtatttccttcat |
296 |
Q |
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| T |
4641966 |
aatcatcatctatatcaaacaaatattaccgtgcatctatgatattctaacaagttagtatttttgtatttccttcat |
4641889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 297
Target Start/End: Complemental strand, 2814866 - 2814612
Alignment:
| Q |
43 |
ccgttgtttcaaagattaaaccgaattatgtttcagtagcatatgggattgtactttgtaattgggagtcttcctgttccttatgcacatgatcttagga |
142 |
Q |
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| T |
2814866 |
ccgttgtttaaaaagttgaaccgagttatgttcccggagcatatgagatcagactttgtaatggggagtcttgatgttccttatgcacgtgatctcttga |
2814767 |
T |
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| Q |
143 |
actttacatatagttttgtcaagnnnnnnngtgaggatgatgcacaataagattttttggtattaattattttgaaaatcatcatctatatcaaacaaat |
242 |
Q |
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| T |
2814766 |
actttagatacggttcagtcaagtggttaagttaggatgatgtacattaaggttttccggtattcgttattttgaaaatcatcatctatatcagacaaat |
2814667 |
T |
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| Q |
243 |
attaccgtgcatctatgatattctaacaagttagtatttttgtatttccttcatc |
297 |
Q |
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| T |
2814666 |
attattgtgcatctatggtgttctaaccatttgatatttttgtatttcctccatc |
2814612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 297
Target Start/End: Original strand, 7852578 - 7852835
Alignment:
| Q |
44 |
cgttgtttcaaagattaaaccgaattatgtttcagtagcatatgggattgtactttgtaattgggagtcttcctgttccttatgcacatgatcttaggaa |
143 |
Q |
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| T |
7852578 |
cgttgtttcaaagattgaaccgacttatgtttccgacgctgatgggattgtactttgtaatggggagtctttatgttccttatgcacatgatctcatgaa |
7852677 |
T |
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| Q |
144 |
ctttacatatagttttgtc----aagnnnnnnngtgaggatgatgcacaataagattttttggtattaattattttgaaaatcatcatctatatcaaaca |
239 |
Q |
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| T |
7852678 |
ctttacatacagttctgcctgccaagtatttatgggaggatgatgtacaattgaattttttggtattagttattttgaaaatcatcatctatatcaaaca |
7852777 |
T |
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| Q |
240 |
aatattaccgtgcatctatgatattctaacaagttagtatttttgtatttccttcatc |
297 |
Q |
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| T |
7852778 |
aatattactgtgcatctatgatattctaactagttagtatgtttatatttccttcatc |
7852835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 44 - 297
Target Start/End: Complemental strand, 5563497 - 5563239
Alignment:
| Q |
44 |
cgttgtttcaaagattaaacc-gaattatgtttcagtagcatatgggattgtactttgtaattgggagtcttcctgttccttatgcacatgatcttagga |
142 |
Q |
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|||||||||||||||| |||| || ||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||| |||| || |||| |
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| T |
5563497 |
cgttgtttcaaagattgaacctgatttatgtttccggagctgatgggattgtactttgtaatggggagtcttcctgttccttatgcatatgaactcagga |
5563398 |
T |
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| Q |
143 |
actttacatatagttttgtc----aagnnnnnnngtgaggatgatgcacaataagattttttggtattaattattttgaaaatcatcatctatatcaaac |
238 |
Q |
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|||||||||| ||| || | ||| || ||||||||| ||||| |||||| | |||||| |||||||||||||||||||||||||||||| |
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| T |
5563397 |
actttacatacggttctgcctgccaagtatttatgtaaggatgatgtacaattggattttcttgtattagttattttgaaaatcatcatctatatcaaac |
5563298 |
T |
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| Q |
239 |
aaatattaccgtgcatctatgatattctaacaagttagtatttttgtatttccttcatc |
297 |
Q |
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| T |
5563297 |
aaatattattgtgcatctatgatattctaaccagttagtatgtttatatttccttcatc |
5563239 |
T |
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