View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4188_low_9 (Length: 246)
Name: NF4188_low_9
Description: NF4188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4188_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 6772301 - 6772494
Alignment:
| Q |
1 |
tgtagccataccaatatgccggttaccgtaagtgttgagactgctcacacatcatgaacctgttactcacacaaggatatcaattttacataaagattag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6772301 |
tgtagccataccaatatgccggttaccgtaagtgttgagactgctcccacatcatgaacctgttactcacacaaggatatcaattttacataaagattag |
6772400 |
T |
|
| Q |
101 |
gaataaaacttgaagttgtaatgttcttagggaggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgtaaccaatcctgatc |
194 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6772401 |
gaataaaacttgaagttgtaatgttcttagtgaggatgtaccttgagatagaatgcaactgcagtaaatatacatactgtaaccaatcctgatc |
6772494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 6777396 - 6777594
Alignment:
| Q |
1 |
tgtagccataccaatatgccggttaccgtaagtgttgagactgctcacacatcatgaacctgttactcacacaaggatatcaattttacataaagattag |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6777396 |
tgtagccataccaatatgccggttaccgcaagtgttgagactgctcccacatcatgaacctgttactcacacaaggatatcaattttacataaagattag |
6777495 |
T |
|
| Q |
101 |
gaataaaacttgaagttgtaatgttcttagggaggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgtaaccaatcctgatccagat |
199 |
Q |
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| T |
6777496 |
gaataaaacttgaagttgtaatgttcttagtgaggatgtaccttgagatagaatgcaactgcagtaaatatatatcatgtaaccaatcctgatccagat |
6777594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 37464835 - 37464631
Alignment:
| Q |
3 |
tagccataccaatatgccggttaccgtaagtgttgagactgctcacaca------tcatgaacctgttactcacacaaggatatcaattttacataaaga |
96 |
Q |
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|||||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
37464835 |
tagccataccaatatgccggttaccgcaagtgctgggactgctcccacagccacatcatgaacctgttactcacacacggatatcaattttacataaata |
37464736 |
T |
|
| Q |
97 |
ttaggaataaaa-cttgaagttgtaatgttcttagggaggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgtaaccaatcctgatcc |
195 |
Q |
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||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
37464735 |
ttaggaacaaaaacttgaagctgtaatgttcttagttgggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgcaaccaatcccgatcc |
37464636 |
T |
|
| Q |
196 |
agata |
200 |
Q |
| |
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||||| |
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| T |
37464635 |
agata |
37464631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 37589221 - 37589427
Alignment:
| Q |
1 |
tgtagccataccaatatgccggttaccgtaagtgttgagactgctcacaca------tcatgaacctgttactcacacaaggatatcaattttacataaa |
94 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| || |||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
37589221 |
tgtagccataccaatatgccggttacggcaagtgctgggactgctcccacagccacatcatgaacctgttactcatacatggatatcaattttacataaa |
37589320 |
T |
|
| Q |
95 |
gattaggaataaaa-cttgaagttgtaatgttcttagggaggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgtaaccaatcctgat |
193 |
Q |
| |
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|||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37589321 |
tattaggaacaaaaacttgaagctgtaatgttcttagttgggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgcaaccaatcctgat |
37589420 |
T |
|
| Q |
194 |
ccagata |
200 |
Q |
| |
|
||||||| |
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|
| T |
37589421 |
ccagata |
37589427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 49021980 - 49021782
Alignment:
| Q |
9 |
taccaatatgccggttaccgtaagtgttgagactgctcacaca------tcatgaacctgttactcacacaaggatatcaattttacataaagattagga |
102 |
Q |
| |
|
|||||||||||||||||| | ||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
49021980 |
taccaatatgccggttacggcaagtgctgggactgctcccacagccacatcatgaacctgttactcacacaaggatatcaattttacatatatattagga |
49021881 |
T |
|
| Q |
103 |
ataa-aacttgaagttgtaatgttcttagggaggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgtaaccaatcctgatccagata |
200 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
49021880 |
ataataacttgaagttgtaatgttcttagttgggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgcaaccaatcttgatccagata |
49021782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 37582931 - 37583084
Alignment:
| Q |
48 |
cacatcatgaacctgttactcacacaaggatatcaattttacataaagattaggaataaaa-cttgaagttgtaatgttcttagggaggatgtaccttga |
146 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
37582931 |
cacatcatgaacctgttactcacacatggatatcaattttacataaatattaggattaaaaacttgaacctgtaatgttcttagttgggatgtaccttga |
37583030 |
T |
|
| Q |
147 |
gatagaatgcaactgcagtaaatatacatcctgtaaccaatcctgatccagata |
200 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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|
| T |
37583031 |
gatagaatgcaactgccgtaaatatacatcctgcaaccaatcctgatccagata |
37583084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 37426262 - 37426460
Alignment:
| Q |
9 |
taccaatatgccggttaccgtaagtgttgagactgctcacaca------tcatgaacctgttactcacacaaggatatcaattttacataaagattagga |
102 |
Q |
| |
|
|||||||||||||||||| | ||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
37426262 |
taccaatatgccggttacggcaagtgctgggactgctcccacagccacatcatgaacctgttactcacacaaggatatcaattttacatatatattagga |
37426361 |
T |
|
| Q |
103 |
ataa-aacttgaagttgtaatgttcttagggaggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgtaaccaatcctgatccagata |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
37426362 |
ataataacttgaagttgtaatgttcttagttgggatgtaacttgagatagaatgcaactgcagtaaatatacatcctgcaaccaatcttgatccagata |
37426460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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