View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4189_high_12 (Length: 242)
Name: NF4189_high_12
Description: NF4189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4189_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37797064 - 37797289
Alignment:
| Q |
1 |
cctcgtatggtgtttcactatagggtgttgtcacctggtttatccattatctgcaaattcttgcactagctttgccttttcattgccaagctctttgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
37797064 |
cctcgtatggtgtttcactatagggtgttgtcacctggtttatccattatctgcaaattcttgcactagtttttccttttcattgccaagctctttgtca |
37797163 |
T |
|
| Q |
101 |
ataaaccttacatgaattgattcttccaccattaaggtttcttcgttatatactctttatactctaggtcgttcaaaatatcctcaaaacacatacattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
37797164 |
ataaaccttacatgaattgattcttccaccattaaggtttcttcgttatatactctttatactctaggtcgttcaaaatattctaaaaacacatacattt |
37797263 |
T |
|
| Q |
201 |
gtggtttgaaaataagaattcattac |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37797264 |
gtggtttgaaaataagaattcattac |
37797289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University