View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4189_low_1 (Length: 610)

Name: NF4189_low_1
Description: NF4189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4189_low_1
NF4189_low_1
[»] chr1 (7 HSPs)
chr1 (11-374)||(789696-790059)
chr1 (368-493)||(791619-791744)
chr1 (100-188)||(15642526-15642615)
chr1 (148-188)||(16756202-16756242)
chr1 (543-590)||(791794-791841)
chr1 (98-180)||(42297431-42297514)
chr1 (148-188)||(18428123-18428163)
[»] chr4 (2 HSPs)
chr4 (98-189)||(38766158-38766250)
chr4 (100-198)||(9012341-9012440)
[»] chr7 (4 HSPs)
chr7 (98-168)||(30614683-30614754)
chr7 (100-198)||(37339704-37339803)
chr7 (98-180)||(29059874-29059957)
chr7 (98-180)||(31492172-31492255)
[»] chr8 (3 HSPs)
chr8 (98-188)||(4125005-4125096)
chr8 (106-144)||(10544630-10544668)
chr8 (98-180)||(19715714-19715798)
[»] chr5 (1 HSPs)
chr5 (98-188)||(10591996-10592087)
[»] chr6 (1 HSPs)
chr6 (98-198)||(12836868-12836969)
[»] chr2 (1 HSPs)
chr2 (148-188)||(5394516-5394556)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 789696 - 790059
Alignment:
Q  11 atgaaagcgcttaaacgagacgacacaagtcccttttagcttaactacgatccttgtttgaattcagtcttggacatgaaggtgccctaaaacgcttagg 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  789696 atgagagcgcttaaacgagacgacacaagtcccttttagcttaactacgatccttgtttgaattcagtcttggacatgcaggtgccttaaaacgcttagg 789795  T
Q  111 gaaagtttgccgcctatttaggtctcataaagcttgaggattagtctcggcagttgcgcgcggagaatactcgatttatgccgaaaaagaatagcttccc 210  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  789796 gaaagtttaccgcctatttaggtctcataaagctcgaggattagtctcggcagttgcacgcggagaatactcgatttacgccgaaaaagaatagcttccc 789895  T
Q  211 taagttctaaattagtaaattttagcnnnnnnngaggggtctttattaatcaacctttgtcatgactttaaattcaagatttcaagttgtaaatcacaac 310  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  789896 taagttctaaattagtaaattttagctttttttgaggggtctttattaatcaacctttgtcatgattttaaattcaagatttcaagttgtaagtcacaaa 789995  T
Q  311 gatactgatacctattttgcttgtcatggtagacaaactaatccatatcatcaatagtaaaaat 374  Q
    ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  789996 gatgctgatacctattttgtttgtcatgatagacaaactaatccatatcatcaatagtaaaaat 790059  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 368 - 493
Target Start/End: Original strand, 791619 - 791744
Alignment:
Q  368 taaaaatcacaatcgcactacaaatgaataaaaatcacaaatttatgaagtactaataaatgtagttacccttatcaaaatgtgagcaacttcatgacat 467  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  791619 taaaaatcataatcgcactacaaatgaataaaaatcacaaatttatgaagtactaataaacgtagttacccttatcaaaatgtgagcaacttcatgaaat 791718  T
Q  468 gtacacaattcctagtatattgcaac 493  Q
    ||||||||||||||||||||||||||    
T  791719 gtacacaattcctagtatattgcaac 791744  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 15642526 - 15642615
Alignment:
Q  100 aaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgag-gattagtctcggcagttgcgcgcggagaatactcgattta 188  Q
    |||| |||||||| ||||||||||| |||| |||| || || ||| ||| ||||| |||| |||||||||||||||| |||| |||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgattta 15642615  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 16756202 - 16756242
Alignment:
Q  148 ggattagtctcggcagttgcgcgcggagaatactcgattta 188  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  16756202 ggattagtctccgcagttgcgcgcggaggatactcgattta 16756242  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 590
Target Start/End: Original strand, 791794 - 791841
Alignment:
Q  543 catcatcaattccgtagctttctttcgtacaactgaagtttaagagag 590  Q
    ||||||||||  ||||  ||||||||||||||||||||||||||||||    
T  791794 catcatcaatagcgtaattttctttcgtacaactgaagtttaagagag 791841  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 42297514 - 42297431
Alignment:
Q  98 taaaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcgcgcggagaatac 180  Q
    |||||| |||||||| ||| ||||| | |||| ||||||| || ||| |||| ||||||||| |||||||||||||||| ||||    
T  42297514 taaaactcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 42297431  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 18428163 - 18428123
Alignment:
Q  148 ggattagtctcggcagttgcgcgcggagaatactcgattta 188  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  18428163 ggattagtctctgcagttgcgcgcggaggatacccgattta 18428123  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 38766158 - 38766250
Alignment:
Q  98 taaaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcgcgcggagaatactcgatttat 189  Q
    |||||| |||||||| ||| ||||||| |||| ||||||| || ||| |||| ||||||||| |||||||||||||||| |||| ||||||||    
T  38766158 taaaactcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttat 38766250  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 9012341 - 9012440
Alignment:
Q  100 aaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcgcgcggagaatactcgatttatgccgaaaaa 198  Q
    |||| |||||||| || |||||||| | || |||| || || ||| |||| ||||||||| |||||||||||||||| |||| |||||||| || |||||    
T  9012341 aaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaaaa 9012440  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 30614754 - 30614683
Alignment:
Q  98 taaaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcg 168  Q
    |||||| ||||| || |||||| |||  |||||||||||| ||||||||||| |||||||||||||||||||    
T  30614754 taaaactcttagagagagtttgtcgctcatttaggtctcagaaagcttgaggaattagtctcggcagttgcg 30614683  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 37339803 - 37339704
Alignment:
Q  100 aaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcgcgcggagaatactcgatttatgccgaaaaa 198  Q
    |||| ||||| || ||| |||||||||||| |||| ||||| ||| |||| ||||||||| |||||||||| ||||| |||| |||||||| || |||||    
T  37339803 aaactcttagtgagagtctgccgcctatttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgatttataccaaaaaa 37339704  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 29059874 - 29059957
Alignment:
Q  98 taaaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcgcgcggagaatac 180  Q
    |||||| |||||||| ||  ||||||| |||| |||| || || |||||||| ||||||||| |||||||||||||||| ||||    
T  29059874 taaaactcttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatac 29059957  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 31492172 - 31492255
Alignment:
Q  98 taaaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcgcgcggagaatac 180  Q
    |||||| |||||||| ||  ||||||| ||||||||| || || ||| |||| ||||||||| |||||||||||||||| ||||    
T  31492172 taaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 31492255  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 4125096 - 4125005
Alignment:
Q  98 taaaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcgcgcggagaatactcgattta 188  Q
    |||||| |||||||| ||  ||||||| |||| |||| || || ||| |||| ||||||||| |||||||||||||||| |||| |||||||    
T  4125096 taaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattta 4125005  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 10544630 - 10544668
Alignment:
Q  106 ttagggaaagtttgccgcctatttaggtctcataaagct 144  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  10544630 ttagggagagtttgccgcctatttaggtctcacaaagct 10544668  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 19715798 - 19715714
Alignment:
Q  98 taaaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg--attagtctcggcagttgcgcgcggagaatac 180  Q
    |||||| || ||||| || |||||||| |||| |||| || || ||| ||||  ||||||||| |||||||||||||||||||||    
T  19715798 taaaactctcagggagagcttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatac 19715714  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 10591996 - 10592087
Alignment:
Q  98 taaaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcgcgcggagaatactcgattta 188  Q
    |||||| |||||||| ||| ||||||| ||||  ||| || || ||| |||| ||||||||| |||||||||||||||| |||| |||||||    
T  10591996 taaaactcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgattta 10592087  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 12836969 - 12836868
Alignment:
Q  98 taaaacgcttagggaaagtttgccgcctatttaggtctcataaagcttgagg-attagtctcggcagttgcgcgcggagaatactcgatttatgccgaaa 196  Q
    |||||| |||||||| || | |||||| |||| |||| || || |||||||| |||||||||  ||||||||||||||| |||| || ||||| || |||    
T  12836969 taaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttatacccaaa 12836870  T
Q  197 aa 198  Q
    ||    
T  12836869 aa 12836868  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 5394516 - 5394556
Alignment:
Q  148 ggattagtctcggcagttgcgcgcggagaatactcgattta 188  Q
    ||||||||||| |||||||| ||||||| ||||||||||||    
T  5394516 ggattagtctccgcagttgcacgcggaggatactcgattta 5394556  T

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