View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4189_low_18 (Length: 239)
Name: NF4189_low_18
Description: NF4189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4189_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 6832353 - 6832202
Alignment:
| Q |
70 |
tcgtgatccaacaactcaaaatggtgtatatttcaaaaacaaagggtacaccgtaacttattagtctatcaaattnnnnnnntgttgtaactgatttgtt |
169 |
Q |
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| T |
6832353 |
tcgtgagccaacaacttaaaatggtgtatatttcaaaaacaaagggtacaccgtaacttattagtctatcaaataaaaaaaatggtgtaactgatttctt |
6832254 |
T |
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| Q |
170 |
ttagtgatatgttatttgaacaattatttttgagttaatttatgagacaact |
221 |
Q |
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| T |
6832253 |
ttagtgatatgttatttgaacaattatttttgagataatttatgagacaact |
6832202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6832559 - 6832490
Alignment:
| Q |
1 |
tttaagtattgatagttgtatattggttatagcaattgtgtcgtccttttcattaccattgttgcgaagt |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6832559 |
tttaagtattgatagttgtatattggttatagcaattgtgtcgtccttttcattaccattgttgcgaagt |
6832490 |
T |
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