View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4189_low_3 (Length: 458)
Name: NF4189_low_3
Description: NF4189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4189_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 42601112 - 42600700
Alignment:
| Q |
1 |
tgaggctaaaacacactataagaactaaaaacatatcaaaccctatattatctattattacaacaatatgttgaagagaaaagagagnnnnnnn--cacg |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
42601112 |
tgaggctaaaacacactataagaactaaaaacatatcaaaccctatattatctattattacaactatatgttgaagagaaaagagagaaaaaaaaacacg |
42601013 |
T |
|
| Q |
99 |
aaaataagtggcttaaaccacgtgaatatgaagatgtacaagacaaacaggcaaaggaagacttggctgtaaactgttcaacctcaagaacacaaggtgg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42601012 |
aaaataagtggcttaaaccacgtgaatatgaagatgtacaagacaaacaggcaaaggaagacttggctgtaaactgttcaacctcaagaacacaaggtgg |
42600913 |
T |
|
| Q |
199 |
cagttaatcccaactaaattacaaaattggctcacgtgggaatcatgatctctcacgtggttatctaatttcacaattcacaactatcctatataatatc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42600912 |
cagttaatcccaactaaattacaaaattggctcacg---------------------tggttatctaatttcacaattcacaactatcctatataatatc |
42600834 |
T |
|
| Q |
299 |
aaatgtgnnnnnnntacaatgaagagaatatgggggactctatttcacaagttgaccccaactttagatttttaatataattctcaaccgtacatgtata |
398 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42600833 |
aaatgtgaaaaaaatacaatgaagagaa----------tctatttcacaagttgaccccaactttagatttttaatataattctcaaccgtacatgtata |
42600744 |
T |
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| Q |
399 |
attcgagtcacatgttgatctccacctctattcagttttgtttt |
442 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42600743 |
attcaagtcacatgttgatctccacctctattcagttttgtttt |
42600700 |
T |
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