View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4189_low_4 (Length: 383)
Name: NF4189_low_4
Description: NF4189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4189_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 91 - 383
Target Start/End: Complemental strand, 48318502 - 48318216
Alignment:
| Q |
91 |
ggaaggtagaaagagtaccttggcgacatcgagtggattgacgatgacggcggagatgaaagcggcgccggcggcggataaagcgcgttcaacgatggtt |
190 |
Q |
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| T |
48318502 |
ggaaggtagaaagagtaccttggcgacatcgagtggattgacgatgacggcggagatgaaagcggcgccggcggcggataaagcgcgttcaacgatggtt |
48318403 |
T |
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| Q |
191 |
aattgcgcgtcggaatgtgcttgcgacgacattccaggtttaacgtttaagaattgaacaaggagaaggaggagaatgaattgatttagattatatatat |
290 |
Q |
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| T |
48318402 |
aattgcgcgtcggaatgtgcttgcgacgacattccaggtttaacgtttaagaattgaacaa------ggaggagaatgaattgatttagattatatatat |
48318309 |
T |
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| Q |
291 |
ttgtggcgtcaaaatgacggtgcggcgccaaacaatgtcgaaatcccacatcacgtatttattttcccccctctctattttacccatatttta |
383 |
Q |
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| T |
48318308 |
ttgtggcgtcaaaatgacggtgcggcgccaaacaatgtcgaaatcccacatcacgtatttattttcccccctctctattttacccatatttta |
48318216 |
T |
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 41227952 - 41227869
Alignment:
| Q |
98 |
agaaagagtaccttggcgacatcgagtggattgacgatgacggcggagatgaaagcggcgccggcggcggataaagcgcgttca |
181 |
Q |
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|||||||| |||||||| |||||||| |||||||| ||||||||||||| || ||||||||||||||||| |||||||||||| |
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| T |
41227952 |
agaaagaggaccttggcaacatcgaggggattgacaatgacggcggagagaaaggcggcgccggcggcggagaaagcgcgttca |
41227869 |
T |
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