View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4190_high_4 (Length: 382)

Name: NF4190_high_4
Description: NF4190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4190_high_4
NF4190_high_4
[»] chr3 (3 HSPs)
chr3 (177-267)||(12079538-12079628)
chr3 (78-149)||(12079662-12079733)
chr3 (264-328)||(12079447-12079511)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 12079628 - 12079538
Alignment:
Q  177 atataaattaaaaagtcgctcacataagtagagtaatcggaatccttattacattaggtctagcaactttgatcgtaaactccacatggtc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  12079628 atataaattaaaaagtcgctcacataagtagagtaatcggaatccttactgcattaggtctagcaactttgatagtaaactccacatggtc 12079538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 12079733 - 12079662
Alignment:
Q  78 aatggatccagatctgtgtttcaaatagtgcacgttcacttgcctctaacatgtgacacagtcatatttagg 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12079733 aatggatccagatctgtgtttcaaatagtgcacgttcacttgcctctaacatgtgacacagtcatatttagg 12079662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 12079511 - 12079447
Alignment:
Q  264 ggtctaacacaactttgaacgtaaagtcacgcacataagtagagtagtcaaaatccaaacttgat 328  Q
    ||||||||||||||||||||||||||||| |||  ||||||||||||||| ||| ||||||||||    
T  12079511 ggtctaacacaactttgaacgtaaagtcaagcatgtaagtagagtagtcagaattcaaacttgat 12079447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University