View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4190_high_6 (Length: 250)
Name: NF4190_high_6
Description: NF4190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4190_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 39291877 - 39291622
Alignment:
| Q |
10 |
attattctgtgaggcggatatgttatttag---gcaagtttttggaacataaat-----gaacttctttgtatggagtttgactctactatttatagaaa |
101 |
Q |
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| T |
39291877 |
attattctgtgaggcagatatgttatttagtaggcaagtttttggaacataaattaaatgaacttttttgtatggagtttgactctactatttatagaaa |
39291778 |
T |
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| Q |
102 |
agactaagaaactactaactcatacaatgcacgggtgtcaatgtattcgaacttcctttggagtctcttctgcaagtt-------tgtactttgaatttt |
194 |
Q |
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| T |
39291777 |
aaactaagaaactactaactcatacaatgcacgggtgtcaatgtattctaacttcctttggagtctcttctgcaagttttcttcgtgtactttgaatttt |
39291678 |
T |
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| Q |
195 |
gaatgttaaggaaccatcgactgcttactaaaaagacgtctttgacacacttggat |
250 |
Q |
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| T |
39291677 |
gaatgttaaggaaccatcgactgcttactaaaaagacgtctttgacacacttggat |
39291622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 29456818 - 29456757
Alignment:
| Q |
41 |
caagtttttggaacataaatgaacttctttgtatggagtttgactctactatttatagaaaa |
102 |
Q |
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| T |
29456818 |
caagtttttggaacgaaaataaactcctttgcatgaagtttgattctactatttatagaaaa |
29456757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 40945572 - 40945507
Alignment:
| Q |
39 |
ggcaagtttt-tggaacataaatgaacttctttgtatggagtttgactctactatttatagaaaag |
103 |
Q |
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| T |
40945572 |
ggcaagttttgtggaacataaatgaactcctttgcatgaagtttgattctactattcataaaaaag |
40945507 |
T |
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