View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4190_high_7 (Length: 243)
Name: NF4190_high_7
Description: NF4190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4190_high_7 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 39291323 - 39291551
Alignment:
| Q |
14 |
ataacataatccaaaacgtttcaaatctttacgaagttaacaataactgcttggtttgctcgaatacgtttcgtttcttatatttattctgatctaaaag |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39291323 |
ataacataatccaaa-cgtttcaaatctttgcgaagttaacaataacttcttggtttgctcgaatacgtttcgtttcttatatttattctgatctaaaag |
39291421 |
T |
|
| Q |
114 |
gtcaatttcaaaaatcatttgaaaagtaacatttaggggcaccagttacacacaaatgttttcgagcaagttaggctcatcttccttaaagaccaaaaag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39291422 |
gtcaatttcaaaaatcatttgaaaagtaacatttaggggcaccagttacacacaaatgttttcgagtgagttaggctcatcttccttaaagaccaaaaag |
39291521 |
T |
|
| Q |
214 |
aaatgattttgttgtcggagctcgaaagtc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39291522 |
aaatgattttgttgtcggagctcgaaagtc |
39291551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University