View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4190_low_1 (Length: 655)

Name: NF4190_low_1
Description: NF4190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4190_low_1
NF4190_low_1
[»] chr1 (10 HSPs)
chr1 (1-655)||(50391794-50392438)
chr1 (151-265)||(11199914-11200030)
chr1 (151-215)||(43834538-43834602)
chr1 (152-227)||(52551269-52551344)
chr1 (145-187)||(39030152-39030194)
chr1 (144-192)||(6356867-6356916)
chr1 (146-210)||(4392238-4392302)
chr1 (151-223)||(11766028-11766100)
chr1 (552-588)||(33735278-33735314)
chr1 (152-228)||(38637540-38637616)
[»] chr5 (6 HSPs)
chr5 (153-223)||(27856164-27856234)
chr5 (145-228)||(28296072-28296155)
chr5 (168-215)||(18415618-18415665)
chr5 (153-229)||(15159178-15159254)
chr5 (153-223)||(21488819-21488889)
chr5 (153-217)||(33244869-33244933)
[»] chr8 (5 HSPs)
chr8 (143-192)||(19263309-19263358)
chr8 (143-186)||(38291857-38291900)
chr8 (151-216)||(5073024-5073089)
chr8 (176-225)||(2372874-2372923)
chr8 (163-228)||(1418035-1418100)
[»] chr7 (6 HSPs)
chr7 (133-218)||(38116719-38116804)
chr7 (143-211)||(27938807-27938875)
chr7 (155-218)||(25078144-25078207)
chr7 (145-216)||(45100226-45100297)
chr7 (151-228)||(33730103-33730180)
chr7 (151-192)||(6677091-6677132)
[»] chr3 (10 HSPs)
chr3 (143-192)||(50435-50484)
chr3 (151-212)||(42059846-42059907)
chr3 (151-210)||(43978626-43978685)
chr3 (153-206)||(43407680-43407733)
chr3 (153-217)||(37626642-37626706)
chr3 (145-192)||(15863149-15863196)
chr3 (181-223)||(28979035-28979077)
chr3 (146-207)||(23161955-23162016)
chr3 (154-214)||(46954880-46954940)
chr3 (146-214)||(51677343-51677411)
[»] chr2 (7 HSPs)
chr2 (146-215)||(19548187-19548256)
chr2 (132-215)||(8252621-8252704)
chr2 (151-215)||(10066574-10066638)
chr2 (143-215)||(34217580-34217652)
chr2 (166-217)||(40732555-40732606)
chr2 (143-186)||(6467003-6467046)
chr2 (143-192)||(20444184-20444233)
[»] scaffold1743 (1 HSPs)
scaffold1743 (143-192)||(193-242)
[»] chr6 (3 HSPs)
chr6 (145-214)||(14221276-14221345)
chr6 (159-216)||(28940816-28940873)
chr6 (168-217)||(33424561-33424610)
[»] chr4 (7 HSPs)
chr4 (143-192)||(22681170-22681219)
chr4 (550-645)||(52560616-52560709)
chr4 (145-215)||(11307624-11307694)
chr4 (145-215)||(26986701-26986771)
chr4 (154-214)||(21748248-21748308)
chr4 (143-186)||(42756772-42756815)
chr4 (145-207)||(20090557-20090619)
[»] scaffold0548 (1 HSPs)
scaffold0548 (145-216)||(4113-4184)
[»] scaffold0039 (1 HSPs)
scaffold0039 (145-216)||(29063-29136)


Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Original strand, 50391794 - 50392438
Alignment:
Q  1 accacttatacttgatccaaacactaggatctcaatcctgctcccaccaagctgaatttgggttctaataccacttgttggggaaataagtcaatatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |   |      
T  50391794 accacttatacttgatccaaacactaggatctcaatcctgctcccaccaagctgaatttgggttctaataccacttgttggggaaataaggggag--cga 50391891  T
Q  101 ataaagcaaaaataagttaatattcccgaagcataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatctt 200  Q
      ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50391892 cgaaagcaaaaataagtcaatattcccggagcataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatctt 50391991  T
Q  201 atatatccaacattttacacatttatagcaatgtgcgactaaacactcatacttaaaatccaacattttaccagagttctcaacgtgatattagaatcat 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50391992 atatatccaacattttacacatttatagcaatgtgcgactaaccactcatacttaaaatccaacattttaccagagttctcaacgtgatattagaatcat 50392091  T
Q  301 ataatatccaccatggattctctaatgcataccttttaagatattatcatcctcttcattctatctttgttgttt----gctaccatttattctattgtt 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| ||    
T  50392092 ataatatccaccatggattctctaatgcataccttttaagatattatcatcctcttcattctatctttgttgtttgctagctaccatttattctattctt 50392191  T
Q  397 tttcattcaatgaatgttttctctaatatgaaaatatcatcaggatcatggatattgctctctcacatcaagaaactccacaataaataatattatgggt 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392192 tttcattcaatgaatgttttctctaatatgaaaatatcatcaggatcatggatattgctctctcacatcaagaaactccacaataaataatattatgggt 50392291  T
Q  497 gttcaacaataagcctttctagtgaaaggtttgttatgagtgatattgctatgtgctttgctatttctttgtttcacaggtttcttgccaaaagttcatg 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||    
T  50392292 gttcaacaataagcctttctagtgaaaggtttgttatgagtgata------------ttgctatttctttgtttcacaggtttcttgccaaaagttcatg 50392379  T
Q  597 tttttattctcttgttgaaatttttcatgcacccaaaaaatatggtggtaagccccttt 655  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50392380 tttttattctcttgttgaaatttttcatgcacccaaaaaatatggtggtaagctccttt 50392438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 151 - 265
Target Start/End: Complemental strand, 11200030 - 11199914
Alignment:
Q  151 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttata-gcaatgtgcgac-taaacactc 248  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||  ||| ||| |||||||| ||| ||| |||||    
T  11200030 acatctccacccaaaaccttaaggcattaggcatatgagtcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaaccactc 11199931  T
Q  249 atacttaaaatccaaca 265  Q
    | |||||||| ||||||    
T  11199930 acacttaaaacccaaca 11199914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 43834602 - 43834538
Alignment:
Q  151 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 215  Q
    ||||||||||| ||||||||||||||||||||||||| ||| | | |||||||||| ||||||||    
T  43834602 acatctccatcaaaaaccttaagacattaggtatatgggtcccctctcttatatattcaacattt 43834538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 52551344 - 52551269
Alignment:
Q  152 catctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttata 227  Q
    ||||| |||| |||| || ||| |||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||    
T  52551344 catcttcatctaaaatctcaaggcattagatatatgtgtcacatctctcatatatctaacattttacacatttata 52551269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 39030194 - 39030152
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatg 187  Q
    ||||| ||||||||| | |||||||||||||||||||||||||    
T  39030194 gacaccacatctccacctaaaaccttaagacattaggtatatg 39030152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 6356867 - 6356916
Alignment:
Q  144 tgacacgacatctccatccaaaacctt-aagacattaggtatatgagtca 192  Q
    |||||| ||||||||| |||||||||| ||||||| ||||||||||||||    
T  6356867 tgacaccacatctccacccaaaacctttaagacatgaggtatatgagtca 6356916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 4392238 - 4392302
Alignment:
Q  146 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaa 210  Q
    |||| |||||||||||||||| |||||| ||| ||||||||| ||| | | | ||||||||||||    
T  4392238 acaccacatctccatccaaaatcttaaggcatcaggtatatgggtctcctctgttatatatccaa 4392302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 11766028 - 11766100
Alignment:
Q  151 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatt 223  Q
    ||||||||| ||||||||||||| ||||||||  ||  ||||  | ||||||| |||||||||||||| ||||    
T  11766028 acatctccacccaaaaccttaaggcattaggttaataggtcaactctcttataaatccaacattttacccatt 11766100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 588
Target Start/End: Complemental strand, 33735314 - 33735278
Alignment:
Q  552 ctttgctatttctttgtttcacaggtttcttgccaaa 588  Q
    |||||||||||||||||| |||| |||||||||||||    
T  33735314 ctttgctatttctttgttacacaagtttcttgccaaa 33735278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 38637616 - 38637540
Alignment:
Q  152 catctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 228  Q
    |||||||| |||| |||||||| ||||||||||||  ||||| |  |||||||  |||||||||||  |||||||||    
T  38637616 catctccacccaataccttaaggcattaggtatataggtcacctcacttatatggccaacattttatccatttatag 38637540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 27856234 - 27856164
Alignment:
Q  153 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatt 223  Q
    ||||||| ||||||| ||||| ||||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  27856234 atctccacccaaaactttaaggcattaggtatatgagccacctctcttatatatccaacattttacccatt 27856164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 28296072 - 28296155
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 228  Q
    ||||| ||||||||| |||||||||||||| |||||||||||| ||||| | ||||||| || ||| ||||||| |||| ||||    
T  28296072 gacaccacatctccacccaaaaccttaagagattaggtatatgggtcacctctcttatacattcaatattttactcattcatag 28296155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 18415618 - 18415665
Alignment:
Q  168 cttaagacattaggtatatgagtcacatatcttatatatccaacattt 215  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||    
T  18415618 cttaagacattaggtttatgagtctcctatcttatatatccaacattt 18415665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 15159178 - 15159254
Alignment:
Q  153 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatagc 229  Q
    ||||||| ||||||| | || ||||||| |||||||||||||| ||||||| ||  |||||||||  ||||||||||    
T  15159178 atctccacccaaaacttcaaaacattagatatatgagtcacatctcttatacatgtaacattttatccatttatagc 15159254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 21488819 - 21488889
Alignment:
Q  153 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatt 223  Q
    ||||||| | |||| |||||||||| | || || | ||||||| |||||||||||||||||||||| ||||    
T  21488819 atctccaccaaaaatcttaagacatcaagtttaagggtcacatctcttatatatccaacattttactcatt 21488889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 33244933 - 33244869
Alignment:
Q  153 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttta 217  Q
    ||||| ||||||||| ||||   ||||  |||| || ||||||||||||||||||||||||||||    
T  33244933 atctctatccaaaactttaatgtattaaatatacgattcacatatcttatatatccaacatttta 33244869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 19263309 - 19263358
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 192  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  19263309 ttgacaccacatctccatcctaaaccttaagacattaggtatatgagtca 19263358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 38291900 - 38291857
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatat 186  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  38291900 ttgacacgacatcttcatccaaaaccttaagacattaggtatat 38291857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 5073089 - 5073024
Alignment:
Q  151 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 216  Q
    ||||||||| ||||||||||||| ||||| ||||||||| | | | ||||||||||||||||||||    
T  5073089 acatctccacccaaaaccttaaggcattacgtatatgagacgcctctcttatatatccaacatttt 5073024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 2372923 - 2372874
Alignment:
Q  176 attaggtatatgagtcacatatcttatatatccaacattttacacattta 225  Q
    |||| |||||||||||||||||||||||||||||||| | ||| ||||||    
T  2372923 attatgtatatgagtcacatatcttatatatccaacaatatacccattta 2372874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 1418035 - 1418100
Alignment:
Q  163 aaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 228  Q
    ||||| |||| ||||| | ||||||| ||| ||||||||||||||||| ||||||| |||| ||||    
T  1418035 aaaactttaaaacatttgatatatgaatcaaatatcttatatatccaatattttactcattcatag 1418100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 38116719 - 38116804
Alignment:
Q  133 ataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttac 218  Q
    |||| ||||| ||| || |||||| |||||||||||||||||| ||| ||||| | ||||||||||||||||| |||| |||||||    
T  38116719 ataagagaggatgaaaccacatcttcatccaaaaccttaagacgttatgtatacgtgtcacatatcttatatagccaatattttac 38116804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 27938875 - 27938807
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaac 211  Q
    ||||||| |||||| |||||||||||||||| | ||||||||||||||| | | |||||||||||||||    
T  27938875 ttgacaccacatctacatccaaaaccttaaggctttaggtatatgagtctcctttcttatatatccaac 27938807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 25078207 - 25078144
Alignment:
Q  155 ctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttac 218  Q
    ||||| ||||||||||||||||||| |||||||| |||||| ||||||||||| | ||||||||    
T  25078207 ctccacccaaaaccttaagacattatgtatatgaatcacatctcttatatatcgatcattttac 25078144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 45100297 - 45100226
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 216  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||  | |||||||||| |||||||||    
T  45100297 gacaccacatctccatctaaaactttaagacattagttatatgagtcatctctcttatatattcaacatttt 45100226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 33730103 - 33730180
Alignment:
Q  151 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattttacacatttatag 228  Q
    ||||||||||||||||||||||  |||||| | |||| ||||| | |||| |||||||||||||| || |||| ||||    
T  33730103 acatctccatccaaaaccttaatgcattagctctatgggtcacctctcttttatatccaacatttaacccattcatag 33730180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 6677091 - 6677132
Alignment:
Q  151 acatctccatccaaaaccttaagacattaggtatatgagtca 192  Q
    |||||| |||| |||||||||||||||| |||||||||||||    
T  6677091 acatcttcatctaaaaccttaagacatttggtatatgagtca 6677132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 50484 - 50435
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 192  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  50484 ttgacaccacatctccatcccaaaccttaagacattaggtatatgagtca 50435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 42059846 - 42059907
Alignment:
Q  151 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaaca 212  Q
    ||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||| ||||    
T  42059846 acatctccatccaaaaccttaagacattaggtataagtgtcccctctcttatatatcaaaca 42059907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 43978626 - 43978685
Alignment:
Q  151 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaa 210  Q
    ||||||||| ||||||||||||| || |||||||||||||| | | ||||||||||||||    
T  43978626 acatctccacccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaa 43978685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 43407733 - 43407680
Alignment:
Q  153 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatat 206  Q
    ||||||| ||||||||||| | ||||||||||||||||||| | ||||||||||    
T  43407733 atctccacccaaaaccttacgtcattaggtatatgagtcacctttcttatatat 43407680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 37626706 - 37626642
Alignment:
Q  153 atctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttta 217  Q
    ||||||| | |||| ||||||||||||||||||||  | || | |||||||||||||||||||||    
T  37626706 atctccacctaaaatcttaagacattaggtatatgtatgacctctcttatatatccaacatttta 37626642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 15863196 - 15863149
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatgagtca 192  Q
    |||||||| ||||||| |||||||||||||||||| ||||| ||||||    
T  15863196 gacacgacgtctccattcaaaaccttaagacattaagtatacgagtca 15863149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 28979077 - 28979035
Alignment:
Q  181 gtatatgagtcacatatcttatatatccaacattttacacatt 223  Q
    ||||||||||||| | |||||||||||||| ||||||||||||    
T  28979077 gtatatgagtcacctctcttatatatccaatattttacacatt 28979035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 23162016 - 23161955
Alignment:
Q  146 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatc 207  Q
    |||| ||||||||| |||||| |||||| |||  |||||||||||||| | |||||||||||    
T  23162016 acaccacatctccacccaaaatcttaaggcatcgggtatatgagtcacctctcttatatatc 23161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 46954880 - 46954940
Alignment:
Q  154 tctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 214  Q
    ||||| || ||||| |||| || ||| |||||||||| |||||||||||||||| ||||||    
T  46954880 tctccttctaaaactttaaaacgttaagtatatgagttacatatcttatatatcaaacatt 46954940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 51677411 - 51677343
Alignment:
Q  146 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 214  Q
    |||| ||||||||| |||||||   ||||||||||||||||||||||  | | || |||||||||||||    
T  51677411 acaccacatctccacccaaaactccaagacattaggtatatgagtcatctcttttctatatccaacatt 51677343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 19548256 - 19548187
Alignment:
Q  146 acacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 215  Q
    |||| ||||||||| |||||||||||||||||||| |||||| ||| | | |||||||||||||||||||    
T  19548256 acaccacatctccacccaaaaccttaagacattagatatatgggtctcctctcttatatatccaacattt 19548187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 8252621 - 8252704
Alignment:
Q  132 cataatagaggttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 215  Q
    ||||| |||||  ||||| ||||||||||||||||| ||||| | ||||||||| |||| || | |||||||||||||||||||    
T  8252621 cataagagagggcgacaccacatctccatccaaaactttaaggcgttaggtatacgagttacctctcttatatatccaacattt 8252704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 10066638 - 10066574
Alignment:
Q  151 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 215  Q
    ||||||||| |||||| |||||| |||||||||||||  || | |||||||||||||||||||||    
T  10066638 acatctccacccaaaatcttaaggcattaggtatatggatctcctatcttatatatccaacattt 10066574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 34217652 - 34217580
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 215  Q
    ||||||| |||||||  ||||||||||||||   |||||||||| |||||| ||||||||||||||| |||||    
T  34217652 ttgacaccacatctcattccaaaaccttaaggagttaggtatataagtcacctatcttatatatccaccattt 34217580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 40732555 - 40732606
Alignment:
Q  166 accttaagacattaggtatatgagtcacatatcttatatatccaacatttta 217  Q
    ||||||||||||||||||||| || ||| ||||||||||||| |||||||||    
T  40732555 accttaagacattaggtatataagccacttatcttatatatcaaacatttta 40732606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 6467046 - 6467003
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatat 186  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||    
T  6467046 ttgacaccacatctccatccaaaaacttaagacattagttatat 6467003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 20444233 - 20444184
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 192  Q
    ||||||| | |||| ||||| |||||||||| ||||||||||||||||||    
T  20444233 ttgacaccatatcttcatcctaaaccttaaggcattaggtatatgagtca 20444184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 193 - 242
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 192  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  193 ttgacaccacatctccatcctaaaccttaagacattagatatatgagtca 242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 14221345 - 14221276
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 214  Q
    ||||| |||||||||||||||||||||| ||||||| |  ||||||||| | ||||||| ||||||||||    
T  14221345 gacaccacatctccatccaaaaccttaatacattagattaatgagtcacctctcttataaatccaacatt 14221276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 28940816 - 28940873
Alignment:
Q  159 atccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 216  Q
    |||||||| |||||||||||||||||| ||||| | | |||||||| |||||||||||    
T  28940816 atccaaaatcttaagacattaggtatacgagtctcttctcttatatgtccaacatttt 28940873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 33424561 - 33424610
Alignment:
Q  168 cttaagacattaggtatatgagtcacatatcttatatatccaacatttta 217  Q
    ||||||||||| |||||||||||||||| ||||||||||| | |||||||    
T  33424561 cttaagacatttggtatatgagtcacatctcttatatatctatcatttta 33424610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 22681170 - 22681219
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatatgagtca 192  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||||    
T  22681170 ttgacaccacatctccaccctaaaccttaagacattaggtatatgagtca 22681219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 645
Target Start/End: Complemental strand, 52560709 - 52560616
Alignment:
Q  550 tgctttgctatttctttgtttcacaggtttcttgccaaaagttcatgtttttattctcttgttgaaatttttcatgcacccaaaaaatatggtggt 645  Q
    |||||||||||||||||| | |||| ||||||| |||||  ||||| |||  |||||||| || || |||| ||||||||| ||||||||||||||    
T  52560709 tgctttgctatttctttgctacacatgtttcttaccaaa--ttcatttttccattctctttttaaagttttccatgcaccccaaaaatatggtggt 52560616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 11307624 - 11307694
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 215  Q
    ||||| ||||||||| ||||||| ||||||||| ||||||||| ||| | | ||| |||||||||||||||    
T  11307624 gacaccacatctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacattt 11307694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 26986701 - 26986771
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 215  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||| ||||  | ||| |||||| ||||||||    
T  26986701 gacaccacatctccatccaaaaccttaaggcattatgtatatgggtcatttttctaatatatacaacattt 26986771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 21748308 - 21748248
Alignment:
Q  154 tctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 214  Q
    |||||||||||||  ||||||||||||| ||||||||||| | | |||||||| |||||||    
T  21748308 tctccatccaaaattttaagacattaggcatatgagtcacgtcttttatatattcaacatt 21748248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 42756772 - 42756815
Alignment:
Q  143 ttgacacgacatctccatccaaaaccttaagacattaggtatat 186  Q
    ||||||| |||||| |||||||||||||||||| ||||||||||    
T  42756772 ttgacaccacatcttcatccaaaaccttaagactttaggtatat 42756815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 20090557 - 20090619
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatc 207  Q
    |||||||| || |||||||||||| |||  |||||||||||| |||||| | |||||||||||    
T  20090557 gacacgacgtcgccatccaaaaccctaatgcattaggtatataagtcacctctcttatatatc 20090619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 4113 - 4184
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatttt 216  Q
    ||||| ||||||||| ||||||| ||||||||| ||||||||| ||| | | ||| ||||||||||||||||    
T  4113 gacaccacatctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacatttt 4184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 29136 - 29063
Alignment:
Q  145 gacacgacatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatat--ccaacatttt 216  Q
    ||||| ||||||||| |||||| |||||||||| || |||||||||| | | ||||||||||  ||||||||||    
T  29136 gacaccacatctccacccaaaatcttaagacatcagatatatgagtcccctctcttatatatatccaacatttt 29063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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