View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4190_low_4 (Length: 382)

Name: NF4190_low_4
Description: NF4190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4190_low_4
NF4190_low_4
[»] chr3 (3 HSPs)
chr3 (177-267)||(12079538-12079628)
chr3 (78-149)||(12079662-12079733)
chr3 (264-328)||(12079447-12079511)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 12079628 - 12079538
Alignment:
Q  177 atataaattaaaaagtcgctcacataagtagagtaatcggaatccttattacattaggtctagcaactttgatcgtaaactccacatggtc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  12079628 atataaattaaaaagtcgctcacataagtagagtaatcggaatccttactgcattaggtctagcaactttgatagtaaactccacatggtc 12079538  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 12079733 - 12079662
Alignment:
Q  78 aatggatccagatctgtgtttcaaatagtgcacgttcacttgcctctaacatgtgacacagtcatatttagg 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12079733 aatggatccagatctgtgtttcaaatagtgcacgttcacttgcctctaacatgtgacacagtcatatttagg 12079662  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 12079511 - 12079447
Alignment:
Q  264 ggtctaacacaactttgaacgtaaagtcacgcacataagtagagtagtcaaaatccaaacttgat 328  Q
    ||||||||||||||||||||||||||||| |||  ||||||||||||||| ||| ||||||||||    
T  12079511 ggtctaacacaactttgaacgtaaagtcaagcatgtaagtagagtagtcagaattcaaacttgat 12079447  T

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