View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4190_low_5 (Length: 353)
Name: NF4190_low_5
Description: NF4190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4190_low_5 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 10862547 - 10862206
Alignment:
| Q |
1 |
atgtcaagagcaaaaccatatatcggcccattgtgaaggaaaagaacttcagtgataattctagaaatctcagggccagggtcatcaagatcctcaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| |
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| T |
10862547 |
atgtcaagagcaaaaccatatatcggcccattgtgaaggaaaagaacttcagtgataattctagaaatctaagggccagggccatcatgatcctcaaacc |
10862448 |
T |
|
| Q |
101 |
tactaaaaaagtcctcgtcgaacaaaagtggttcgtgttggactgaagtccacatatacctccattttctagacagaatactggtactaa----ctagct |
196 |
Q |
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| T |
10862447 |
ttctaaaaaagtccttgtcgaataaaaggtgttcgtatcaaactgaagtccacatatagctccattttcttgacagaatactggtactaattaactagct |
10862348 |
T |
|
| Q |
197 |
cttggatgctcaagtgttttacgatgccatcaatgacattacatggtaagtcactaattcgatcaacgcgatcacggcgattggccttcttcttggacag |
296 |
Q |
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| T |
10862347 |
cttggatgctcaagtgttttaggatgccatcaatgacattacatggtaagtcactaattcaatcaacgcgatcacggcgattggccttcttcttggacag |
10862248 |
T |
|
| Q |
297 |
agtcataggtgaactacaactccaagcaaaagattaaatatt |
338 |
Q |
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| T |
10862247 |
agtcataggtgaactacaactccaagcaaaagattaaatatt |
10862206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 140 - 335
Target Start/End: Original strand, 40011154 - 40011349
Alignment:
| Q |
140 |
ggactgaagtccacatatacctccattttctagacagaatactggtactaactagctcttggatgctcaagtgttttacgatgccatcaatgacattaca |
239 |
Q |
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| T |
40011154 |
ggactgtaatccacatatacctccactttctagacagaacactagtcctcactaggtctcgggcgttcaagtgttctaggatgccatcgatgacattact |
40011253 |
T |
|
| Q |
240 |
tggtaagtcactaattcgatcaacgcgatcacggcgattggccttcttcttggacagagtcataggtgaactacaactccaagcaaaagattaaat |
335 |
Q |
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| T |
40011254 |
tggtaagtcactgattcgatcaatgtgatcaccgcaattggccttcttcgtgaacagagtcatcagtgaactacaaattcaagcaaaagagtaaat |
40011349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 40011044 - 40011093
Alignment:
| Q |
18 |
atatatcggcccattgtgaaggaaaagaacttcagtgataattctagaaa |
67 |
Q |
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| T |
40011044 |
atatatcggtccattgtggaggaaaagaacttccgtgataattcttgaaa |
40011093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 3488 - 3800
Alignment:
| Q |
18 |
atatatcggcccattgtgaaggaaaagaacttcagtgataattctagaaatctcagggccagggtcatcaagatcctcaaacctactaaaaaagtcctcg |
117 |
Q |
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|||||||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||| |
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| T |
3488 |
atatatcggcccattgtggagtaaaagaatttcggtgataattctagaaatctcagggccagggtcattaagatcctcgaacctacaaaagaagtcctc- |
3586 |
T |
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| Q |
118 |
tcgaacaaaagtg--gttcgtgttggactgaagtccacatatacctccattttctagacagaatactggtactaactagctcttggatgctcaagtgttt |
215 |
Q |
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|||||| || ||| || |||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||| ||| |
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| T |
3587 |
----acaaaattgaagtt---gtgggactgaattccacatatacctccactttctagacagaagactggtactaactagctcttgaatgttcaagcgttc |
3679 |
T |
|
| Q |
216 |
tacgatgccatcaatgacattacatggtaagtcactaattcgatcaacgcgatcacggcgattggccttcttcttggacagagtcataggtgaactacaa |
315 |
Q |
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| T |
3680 |
taggatgccatcaatgacattacatggtaagtcactgattcgatcaatgtgatcaccatgattggccctcttctcggacagagtcataggtgaactgcaa |
3779 |
T |
|
| Q |
316 |
ctccaagcaaaagattaaata |
336 |
Q |
| |
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| T |
3780 |
attcaagcaaaagagtaaata |
3800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 144 - 337
Target Start/End: Complemental strand, 16865462 - 16865269
Alignment:
| Q |
144 |
tgaagtccacatatacctccattttctagacagaatactggtactaactagctcttggatgctcaagtgttttacgatgccatcaatgacattacatggt |
243 |
Q |
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|||| |||| |||| |||||| |||||||| ||||||||||| ||| |||| ||| ||||| ||| ||||| || ||||||||||||||||||| |||| |
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| T |
16865462 |
tgaaatccatatatccctccactttctagatagaatactggtcctagctaggtctcggatgttcaggtgttgtagaatgccatcaatgacattacttggt |
16865363 |
T |
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| Q |
244 |
aagtcactaattcgatcaacgcgatcacggcgattggccttcttcttggacagagtcataggtgaactacaactccaagcaaaagattaaatat |
337 |
Q |
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|||||||| |||||||||| | |||||| | |||||||||||| || |||||||||||| ||||||||||| | ||||||||||| ||||||| |
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| T |
16865362 |
aagtcactgattcgatcaaggtgatcaccgtaattggccttcttgttagacagagtcataagtgaactacaaattcaagcaaaagagtaaatat |
16865269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 16865585 - 16865530
Alignment:
| Q |
21 |
tatcggcccattgtgaaggaaaagaacttcagtgataattctagaaatctcagggc |
76 |
Q |
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| T |
16865585 |
tatcggcccattgtggagcaaaagaacttccgtgataattatacaaacctcagggc |
16865530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 325
Target Start/End: Original strand, 35749227 - 35749406
Alignment:
| Q |
143 |
ctgaagtccacatatacctccattttctagacagaatactggtactaactagctcttggatgctcaagtgttttacgatgccatcaatgacattacatgg |
242 |
Q |
| |
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||||||| |||||||||||||| ||| | |||| |||||| || |||||||| |||| |||| |||| || || ||| ||||||| ||||||||||| |
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| T |
35749227 |
ctgaagttcacatatacctccaattttttgacaaaatactagtcctaactaggtctttgatgtacaagcgtgctaggatatcatcaataacattacatgg |
35749326 |
T |
|
| Q |
243 |
taagtcactaattcgatcaacgcgatcacggcgattggccttcttcttggacagagtcataggtgaactacaactccaagcaa |
325 |
Q |
| |
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||||||||| |||||||||| | ||||| ||||||||||||| || |||||||||||| | |||||||| | ||||||| |
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| T |
35749327 |
taagtcactgattcgatcaatgtgatca---tgattggccttcttgttagacagagtcataaggtaactacaaattcaagcaa |
35749406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 35742869 - 35742984
Alignment:
| Q |
147 |
agtccacatatacctccattttctagacagaatactggtactaactagctcttggatgctcaagtgttttacgatgccatcaatgacattacatggtaag |
246 |
Q |
| |
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||||||| |||||||||| | | |||||| |||||| || | |||||| |||| |||| ||||||| | |||||| ||||||||||| ||||||||| |
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| T |
35742869 |
agtccacttatacctccactgtttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaag |
35742968 |
T |
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| Q |
247 |
tcactaattcgatcaa |
262 |
Q |
| |
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||||| |||||||||| |
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| T |
35742969 |
tcactgattcgatcaa |
35742984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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