View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4190_low_6 (Length: 296)
Name: NF4190_low_6
Description: NF4190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4190_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 34555271 - 34555538
Alignment:
| Q |
19 |
atccaagcgagacaagtgatgctgtgttggaattatcttccttgccaagagcctcaaaagataacaggactaactatgtgcttcaaagtcgttcttgatg |
118 |
Q |
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| T |
34555271 |
atccaagcgagacaagtgatgctgtgttggaattatcttccttgccaagagcctcaaaagataacaggactaactatgtgcttcaaagtcgttcttgatg |
34555370 |
T |
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| Q |
119 |
gtatggattataaatagagcttttgtattcttttttgtaggttgcagcatgttttcatgcaagttatcatgtaattttagtcccttgaagaagaagcaat |
218 |
Q |
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| T |
34555371 |
gtatggattataaatagagcttttgtattcttttttgtaggttgcagcatgttttcatgcaagttatcatgtaattttagtcccttgaagaagaagcaac |
34555470 |
T |
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| Q |
219 |
cttgtatccttattctgaatataaattatgttttataaatgatgaatatgattggcatctgatgatgt |
286 |
Q |
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| T |
34555471 |
cttgtatccttattctgaatataaatgatgttttataaatgatgaatatgattggcatctgatgatgt |
34555538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 31809488 - 31809421
Alignment:
| Q |
219 |
cttgtatccttattctgaatataaattatgttttataaatgatgaatatgattggcatctgatgatgt |
286 |
Q |
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| T |
31809488 |
cttgtatctttattctgaatgtaaattatattttgtaaatgatgaatatgattggcatctgataatgt |
31809421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 36284406 - 36284472
Alignment:
| Q |
21 |
ccaagcgagacaagtgatgctgtgttggaattatcttccttgccaagagcctcaaaagataacagga |
87 |
Q |
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| T |
36284406 |
ccaagcgaggcaagagatgctgtgtcggaattatgttccttgccaaaagcctcaaaagataacagga |
36284472 |
T |
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