View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4191_low_11 (Length: 201)
Name: NF4191_low_11
Description: NF4191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4191_low_11 |
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| [»] scaffold1903 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 35611458 - 35611619
Alignment:
| Q |
16 |
acatttttatctggtttttcatgaagtaaatgccatgaaagagaagagtttgattttgaattcaaatggaatgaaaaagagttatcagtgaatgacccat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35611458 |
acatttttatctggtttttcatgaagtaaatgccatgaaagagaagagtttgattttgaattcaaatggaatgaaaaagagttatcagtgaatgacccat |
35611557 |
T |
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| Q |
116 |
ttgatgaatttgttggagatggcatagtagcttgataaatctgcttgtgcatccatggatac |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35611558 |
ttgatgaatttgttggagatggcatagtagcttgataaatctgcttgtgcatccatggatac |
35611619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 3615087 - 3614926
Alignment:
| Q |
16 |
acatttttatctggtttttcatgaagtaaatgccatgaaagagaagagtttgattttgaattcaaatggaatgaaaaagagttatcagtgaatgacccat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |||| ||| |
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| T |
3615087 |
acatttttatctggtttttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaggagttaccagtgagtgactcat |
3614988 |
T |
|
| Q |
116 |
ttgatgaatttgttggagatggcatagtagcttgataaatctgcttgtgcatccatggatac |
177 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3614987 |
ttgatgaatttgttggagatggcatagtagtttgataaatctgcttgtgcatccatggatac |
3614926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 5568686 - 5568847
Alignment:
| Q |
16 |
acatttttatctggtttttcatgaagtaaatgccatgaaagagaagagtttgattttgaattcaaatggaatgaaaaagagttatcagtgaatgacccat |
115 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
5568686 |
acatttttatctagtttttcataaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttattagtgagtgacccat |
5568785 |
T |
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| Q |
116 |
ttgatgaatttgttggagatggcatagtagcttgataaatctgcttgtgcatccatggatac |
177 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5568786 |
ttgatgagtttgttggagatggcatagtagcttgataaatctgcttgtgcatccatggatac |
5568847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1903 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold1903
Description:
Target: scaffold1903; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 571 - 731
Alignment:
| Q |
16 |
acatttttatctggtttttcatgaagtaaatgccatgaaagagaagagtttgattttgaattcaaatggaatgaaaaagagttatcagtgaatgacccat |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
571 |
acatttttat-tggtttttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttatcagtgagtgacccat |
669 |
T |
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| Q |
116 |
ttgatgaatttgttggagatggcatagtagcttgataaatctgcttgtgcatccatggatac |
177 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
670 |
ttgatgaatttgttggaggtggcatagtagcttgataaatctgcttgtgcatccatggatac |
731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 9981466 - 9981627
Alignment:
| Q |
16 |
acatttttatctggtttttcatgaagtaaatgccatgaaagagaagagtttgattttgaattcaaatggaatgaaaaagagttatcagtgaatgacccat |
115 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
9981466 |
acatttttatgtgatttttcatgaagtaaatgccatgaaagagaagggtttgattttgaattcaaatggaatgaaaaagagttatcggtgagtgacccat |
9981565 |
T |
|
| Q |
116 |
ttgatgaatttgttggagatggcatagtagcttgataaatctgcttgtgcatccatggatac |
177 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
9981566 |
ttgatgaatttgttgaagatggcatagtagcttgataaatgtgcttgtgcatccatgaatac |
9981627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 51541028 - 51541074
Alignment:
| Q |
96 |
gttatcagtgaatgacccatttgatgaatttgttggagatggcatag |
142 |
Q |
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||||||||||| || |||||||||| ||||||||| ||||||||||| |
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| T |
51541028 |
gttatcagtgagtggcccatttgataaatttgttgaagatggcatag |
51541074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 4e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 33130312 - 33130182
Alignment:
| Q |
16 |
acatttttatctggtttttcatgaagtaaatgccatgaaagagaagagtttgattttgaattcaaatggaatgaaaaagagttatcagtgaatgacccat |
115 |
Q |
| |
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||||| || ||||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33130312 |
acattgttgtctggtttttcatgaagtaaacgccaggaaagagaagggtttggttttgaattcaaatggaatgaaaaagagttatcagtgagtgacccat |
33130213 |
T |
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| Q |
116 |
ttgatgaatttgttggagatggcatagtagc |
146 |
Q |
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||||||||||||||||||||||||| ||||| |
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| T |
33130212 |
ttgatgaatttgttggagatggcatggtagc |
33130182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 54670924 - 54670967
Alignment:
| Q |
18 |
atttttatctggtttttcatgaagtaaatgccatgaaagagaag |
61 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
54670924 |
atttttatctggtttttaatgaagtaaacaccatgaaagagaag |
54670967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 15480464 - 15480582
Alignment:
| Q |
16 |
acatttttatctggtttttcatgaagtaaatgccatgaaagagaagagtttgattttgaattcaaatggaatgaaaaagagttatcagtgaatgacccat |
115 |
Q |
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|
||||| || ||||||||||||||||||||| |||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || | |||||| |
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| T |
15480464 |
acattgttgtctggtttttcatgaagtaaacaccattaaatagaagggtttggttttgaattcaaatggaatgaaaaagagttatcagcgagtcacccat |
15480563 |
T |
|
| Q |
116 |
ttgatgaatttgttggaga |
134 |
Q |
| |
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|||||||||||||| |||| |
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| T |
15480564 |
ttgatgaatttgtttgaga |
15480582 |
T |
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