View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4192_high_1 (Length: 222)
Name: NF4192_high_1
Description: NF4192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4192_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 6954126 - 6953939
Alignment:
| Q |
20 |
taatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcct |
119 |
Q |
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| T |
6954126 |
taatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcct |
6954027 |
T |
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| Q |
120 |
tcaactatattcaaagaagctccaaaaatttctgatatgatcaacacaaaagctagcatccaaaacctcattgaaaacattatctgtg |
207 |
Q |
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| T |
6954026 |
tcaactatattcaaagaagctccaaaaatttctgatatgatcaacacaaaagctagcatccaaaacctcattgaaaacattatctgtg |
6953939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 6963682 - 6963492
Alignment:
| Q |
20 |
taatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcct |
119 |
Q |
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| T |
6963682 |
taattgaaattctaatctattgagcttcaaaagatatagcaatgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcct |
6963583 |
T |
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| Q |
120 |
tcaactatattcaaagaagctccaaaaatttctgatat-----gatcaacacaaaagctagcatccaaaacctcattgaaaacattatctg |
205 |
Q |
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| T |
6963582 |
tcaactatattcaaagaagctccaaaaatttctgatatgatctgatcaacacaaaagctagcatccaaaacctcattgaaaacattctctg |
6963492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 18134631 - 18134710
Alignment:
| Q |
39 |
ttgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcc |
118 |
Q |
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| T |
18134631 |
ttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggctttcc |
18134710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 49121840 - 49121919
Alignment:
| Q |
39 |
ttgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcc |
118 |
Q |
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| T |
49121840 |
ttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggctttcc |
49121919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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