View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4192_high_1_N (Length: 348)
Name: NF4192_high_1_N
Description: NF4192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4192_high_1_N |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 182 - 346
Target Start/End: Complemental strand, 7667030 - 7666864
Alignment:
| Q |
182 |
ggttgaaggtaacttcctttgagtttccaaaggggactttgatgttattttttagattgatatttcctcatctaattttgtc--tgtgtgcttagaaaga |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7667030 |
ggttgaaggtaacttcctttgagtttccaaaggggactttgatgttattttttagattgatatttcctcatctaattttgtctttgtgtgcttagaaaga |
7666931 |
T |
|
| Q |
280 |
ttctctggttgtgacacggggatgattttcgacggagacttcatctttggttctgcttcacttggaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7666930 |
ttctctggttgtgacacggggatgattttcgacggagacttcatctttggttccgcttcacttggaa |
7666864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7087440 - 7087326
Alignment:
| Q |
1 |
agagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatgcttcttatcctttgtgcctgaagaagatgcttttgtatgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7087440 |
agagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatgcttcttatcctttgtgcctgaagaagatgctttggtatgttga |
7087341 |
T |
|
| Q |
101 |
ttcggttggctagta |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7087340 |
ttcggttggctagta |
7087326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7667211 - 7667097
Alignment:
| Q |
1 |
agagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatgcttcttatcctttgtgcctgaagaagatgcttttgtatgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
7667211 |
agagtttgatgtggaaaacattatctttctctctacagtttctcttacaccatgatgcttcttatcctttgtacctgaagaagatgcttttgcatgttga |
7667112 |
T |
|
| Q |
101 |
ttcggttggctagta |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7667111 |
ttcggttggctagta |
7667097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 182 - 347
Target Start/End: Complemental strand, 7087259 - 7087093
Alignment:
| Q |
182 |
ggttgaaggtaacttcctttgagtttccaaaggggactttgatgttattttttagattgatatttcctcatctaattttgtct--gtgtgcttagaaaga |
279 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||| ||||| |||| | |||||||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
7087259 |
ggttgaagg-aacttcctttgagtttccaaatgggactttggtgttagttttgatgttgatatttcctcatctagttttgtttttgtgtgcttagaaaga |
7087161 |
T |
|
| Q |
280 |
ttctctggttgtgacacggggatgattttcgacggagacttcatctttggttctgcttcacttggaac |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||| |||||||||| | |||||||||||| |
|
|
| T |
7087160 |
ttctctggttgtgacacggggatgattttcgatggtgacttcgtctttggttccggttcacttggaac |
7087093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University