View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_high_18 (Length: 372)

Name: NF4193_high_18
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_high_18
NF4193_high_18
[»] chr7 (2 HSPs)
chr7 (30-356)||(35878417-35878733)
chr7 (261-305)||(24546950-24546994)
[»] chr5 (2 HSPs)
chr5 (180-310)||(39513519-39513651)
chr5 (181-219)||(6522143-6522181)
[»] chr8 (2 HSPs)
chr8 (238-299)||(13006439-13006500)
chr8 (263-315)||(5055860-5055910)
[»] chr1 (3 HSPs)
chr1 (261-318)||(28026906-28026963)
chr1 (259-316)||(29821742-29821799)
chr1 (260-316)||(33717214-33717270)
[»] chr3 (1 HSPs)
chr3 (260-293)||(54644194-54644227)
[»] chr2 (1 HSPs)
chr2 (181-217)||(2604112-2604148)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 35878733 - 35878417
Alignment:
Q  30 atcatatctaaatatctttctatgaggtgtcatcttagtgctaaaagtttagcctactagtctcaagggacagagttctaacctcaacggagacagttta 129  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35878733 atcatatctaaatatctttctgtgaggtgtcatcttagtgctaagagtttagcctactagtctcaagggacagagttctaacctcaacggagacagttta 35878634  T
Q  130 acgataagtggaaaaatcgctcaagcagcgcgagtatataaacacaagttatgtaaatcctaagtttgaataatagaaaggtactgcagccacactgtag 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35878633 acgataagtggaaaaatcgctcaagcagcgcgagtatataaacataagttatgtaaatcctaagtttgaataatagaaaggtactgcagccacactgtag 35878534  T
Q  230 ccggagacaagcataatcggctgaactttgtgatcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaactggtttactgctct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||         ||||||||||||| ||||||||||||||    
T  35878533 ccggagacaagcataatcggctgaactttgtgatcaaatatt--gtgttctctatttacgttt--------cttttactttagaaatggtttactgctct 35878444  T
Q  330 aaaattttctcaggggagtgaataaac 356  Q
    |||||||||| ||||||||||||||||    
T  35878443 aaaattttctaaggggagtgaataaac 35878417  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 24546994 - 24546950
Alignment:
Q  261 gatcaaatattgtgtgttctctatttacgtttttcgtatcttttt 305  Q
    ||||||||||  ||| |||||||||| ||||||||||||||||||    
T  24546994 gatcaaatatcatgttttctctatttgcgtttttcgtatcttttt 24546950  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 310
Target Start/End: Original strand, 39513519 - 39513651
Alignment:
Q  180 atgtaaatcctaagtttgaataatagaaaggtactgcagccacactgtag-ccggagac--aagcataatcggctgaactttgtgatcaaatattgtgtg 276  Q
    |||||||||||||| |||||||||||||||||||||||||  | |||||| | ||||||  | ||||  | ||||||| | ||||||||||| |||| ||    
T  39513519 atgtaaatcctaagcttgaataatagaaaggtactgcagctgctctgtagtcgggagacctaggcat-tttggctgaattctgtgatcaaatcttgtttg 39513617  T
Q  277 ttctctatttacgtttttcgtatctttttacttt 310  Q
    |||||| ||| |||||||||||||| ||| ||||    
T  39513618 ttctctgtttgcgtttttcgtatctgtttgcttt 39513651  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 6522181 - 6522143
Alignment:
Q  181 tgtaaatcctaagtttgaataatagaaaggtactgcagc 219  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  6522181 tgtaaatcctaagtttgaataatagaaaggtactacagc 6522143  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 13006439 - 13006500
Alignment:
Q  238 aagcataatcggctgaactttgtgatcaaatattgtgtgttctctatttacgtttttcgtat 299  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||||| || |||| ||||    
T  13006439 aagcataattggctgaactttgtgatcaaatatcatgtgttctctatttgcgatttttgtat 13006500  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 5055860 - 5055910
Alignment:
Q  263 tcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaac 315  Q
    |||||||||||||||||||| | |  |||||||||||||||||||||| ||||    
T  5055860 tcaaatattgtgtgttctctctgt--gtttttcgtatctttttacttttgaac 5055910  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 28026963 - 28026906
Alignment:
Q  261 gatcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaactgg 318  Q
    ||||||||||  ||||||||||||||  |||||||||||||||||||||| |||||||    
T  28026963 gatcaaatatcttgtgttctctatttgtgtttttcgtatctttttacttttgaactgg 28026906  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 29821742 - 29821799
Alignment:
Q  259 gtgatcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaact 316  Q
    |||||||||||| |||||||||| ||||  | |||||||||||||||||||| |||||    
T  29821742 gtgatcaaatatagtgtgttctccatttgtgattttcgtatctttttacttttgaact 29821799  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 33717270 - 33717214
Alignment:
Q  260 tgatcaaatattgtgtgttctctatttacgtttttcgtatctttttactttagaact 316  Q
    ||||||||| ||||||||||||| ||| | |||||||||||| |||||||| |||||    
T  33717270 tgatcaaatcttgtgtgttctctgtttgcatttttcgtatctgtttacttttgaact 33717214  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Original strand, 54644194 - 54644227
Alignment:
Q  260 tgatcaaatattgtgtgttctctatttacgtttt 293  Q
    ||||||||||||||||||||||||||||| ||||    
T  54644194 tgatcaaatattgtgtgttctctatttacatttt 54644227  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 2604148 - 2604112
Alignment:
Q  181 tgtaaatcctaagtttgaataatagaaaggtactgca 217  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  2604148 tgtaaatcctaagcttgattaatagaaaggtactgca 2604112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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