View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_high_19 (Length: 366)

Name: NF4193_high_19
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_high_19
NF4193_high_19
[»] chr5 (4 HSPs)
chr5 (11-175)||(43451854-43452018)
chr5 (11-150)||(17220464-17220603)
chr5 (300-344)||(43451659-43451703)
chr5 (11-101)||(29599093-29599183)
[»] chr2 (3 HSPs)
chr2 (11-137)||(32208855-32208981)
chr2 (12-118)||(12753150-12753256)
chr2 (11-45)||(25966716-25966750)
[»] chr4 (4 HSPs)
chr4 (12-153)||(23148599-23148740)
chr4 (11-152)||(42457857-42457998)
chr4 (11-98)||(12831448-12831535)
chr4 (12-129)||(902743-902860)
[»] chr8 (1 HSPs)
chr8 (11-137)||(37341134-37341260)
[»] chr7 (2 HSPs)
chr7 (11-152)||(28245653-28245794)
chr7 (300-344)||(28245988-28246032)
[»] chr6 (1 HSPs)
chr6 (54-130)||(30146088-30146164)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 43452018 - 43451854
Alignment:
Q  11 cagagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgag 110  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43452018 cagagaccatgtgtatgttgttatgtccagtggtgaggtgcagcaagggtctgtggcacgacaacatttggaggaagtatttagagagatttacggtgag 43451919  T
Q  111 aaggtttaccgtcgtaggcaaaatgtttacggtggaaggggtgccggaggtgtagtgatatcggg 175  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43451918 aaggtttaccgtcgtaggcaaaatgtttacggtggaaggggtgctggaggtgtagtgatatcggg 43451854  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 17220603 - 17220464
Alignment:
Q  11 cagagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgag 110  Q
    |||||||||| |||||||||||||||||||||||||||||||  ||||||||| ||||  ||||||||||||||||||||| |||||| |  |||||| |    
T  17220603 cagagaccatatgtatgttgttatgtccagtggtgaggtgcaggaagggtctgaggcattacaacatttggaggaagtattgagagaggtgcatggtggg 17220504  T
Q  111 aaggtttaccgtcgtaggcaaaatgtttacggtggaaggg 150  Q
    ||||||||||||||||||||| ||||| | ||||||||||    
T  17220503 aaggtttaccgtcgtaggcaacatgttgagggtggaaggg 17220464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 43451703 - 43451659
Alignment:
Q  300 caattttctgtttgaacatatggtcaaaggcttaaacagatggct 344  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  43451703 caattttctgtttgaacatatggtcaaaggcttaaacaggtggct 43451659  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 29599093 - 29599183
Alignment:
Q  11 cagagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatt 101  Q
    |||||||||||| ||||||||||| | ||||| || |||||  |||| || || || | ||||||||||| |||||||||| |||||||||    
T  29599093 cagagaccatgtatatgttgttatatgcagtgatgtggtgccgcaagagtatgaggaatgacaacatttgaaggaagtattgagagagatt 29599183  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 32208855 - 32208981
Alignment:
Q  11 cagagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgag 110  Q
    |||||||||| | |||||||||||||||||||||| ||||| ||||||||||| |||| ||||| |||||||||| || |  |||||| |||||||||      
T  32208855 cagagaccatatatatgttgttatgtccagtggtgtggtgccacaagggtctgaggcatgacaatatttggaggatgtctcgagagaggtttatggtgga 32208954  T
Q  111 aaggtttaccgtcgtaggcaaaatgtt 137  Q
    |||||||| ||||||||||| ||||||    
T  32208955 aaggtttatcgtcgtaggcataatgtt 32208981  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 12753150 - 12753256
Alignment:
Q  12 agagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgaga 111  Q
    ||||||||||| |||||||||||||||||||||| |||||  ||| |||||| |||| | ||   ||| |||||||| || |||||| || |||| | ||    
T  12753150 agagaccatgtatatgttgttatgtccagtggtgtggtgccgcaaaggtctgaggcatgtcattgttttgaggaagtcttgagagaggttcatggaggga 12753249  T
Q  112 aggttta 118  Q
    |||||||    
T  12753250 aggttta 12753256  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 25966716 - 25966750
Alignment:
Q  11 cagagaccatgtgtatgttgttatgtccagtggtg 45  Q
    ||||||||||||||||||||| |||||||||||||    
T  25966716 cagagaccatgtgtatgttgtgatgtccagtggtg 25966750  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 23148740 - 23148599
Alignment:
Q  12 agagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgaga 111  Q
    |||||||||||||||||||| |||| |||||||| |||||  ||||||| || || | ||||||||||||||||||| |  ||| || ||||||||| ||    
T  23148740 agagaccatgtgtatgttgtgatgttcagtggtgtggtgccgcaagggtatgaggaatgacaacatttggaggaagtctcgagaaaggtttatggtggga 23148641  T
Q  112 aggtttaccgtcgtaggcaaaatgtttacggtggaaggggtg 153  Q
    ||||||| || |||||||| |||||| | ||||| |||||||    
T  23148640 aggtttatcgccgtaggcataatgttcagggtggcaggggtg 23148599  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 42457998 - 42457857
Alignment:
Q  11 cagagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgag 110  Q
    |||| ||| |||||||||||| |||| |||| ||| ||||   |||||||||| |||| |  |||||||||||||||| || |||||| |||||||||      
T  42457998 cagaaaccgtgtgtatgttgtgatgtacagtagtgtggtgtcgcaagggtctgaggcatggaaacatttggaggaagtcttgagagaggtttatggtgga 42457899  T
Q  111 aaggtttaccgtcgtaggcaaaatgtttacggtggaaggggt 152  Q
    |||||||| ||||||||| | |||||||| ||||| ||||||    
T  42457898 aaggtttatcgtcgtaggaataatgtttagggtggcaggggt 42457857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 12831535 - 12831448
Alignment:
Q  11 cagagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagag 98  Q
    ||||||||||| |||||||||||||||||||||||||||||| |  | ||||| |||| || || |||| ||||||||||| ||||||    
T  12831535 cagagaccatgggtatgttgttatgtccagtggtgaggtgcagcgcgagtctgaggcatgataatatttagaggaagtattgagagag 12831448  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 902743 - 902860
Alignment:
Q  12 agagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgaga 111  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||  |||| |  | |||||||||||| | || || ||| |  |||||| ||    
T  902743 agagatcatgtgtatgttgttatgaccagtggtgaggtgcagcaagggtctaaggcatggaatcatttggaggaaatcttgagggaggtgcatggtggga 902842  T
Q  112 aggtttaccgtcgtaggc 129  Q
    ||||||| || |||||||    
T  902843 aggtttatcgacgtaggc 902860  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 37341134 - 37341260
Alignment:
Q  11 cagagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgag 110  Q
    |||||| ||||| ||| |||||||||||||||||| ||||   ||||||| || | || | ||| ||||||||||||| || |||||| ||||||||| |    
T  37341134 cagagatcatgtatattttgttatgtccagtggtgtggtgtcgcaagggtatgagacatggcaaaatttggaggaagtcttgagagaggtttatggtggg 37341233  T
Q  111 aaggtttaccgtcgtaggcaaaatgtt 137  Q
    |||||||| ||||||||||| ||||||    
T  37341234 aaggtttatcgtcgtaggcataatgtt 37341260  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 28245653 - 28245794
Alignment:
Q  11 cagagaccatgtgtatgttgttatgtccagtggtgaggtgcaacaagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgag 110  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |||| |  | |||||||||||| | || |||||| |  || ||| |    
T  28245653 cagagaccatgtgtatgctgttatgactagtggtgaggtgcaacaagggtctgaggcatggaatcatttggaggaaatcttaagagaggtgcatagtggg 28245752  T
Q  111 aaggtttaccgtcgtaggcaaaatgtttacggtggaaggggt 152  Q
    |||||||| || |||||||  |||||| | ||||| ||||||    
T  28245753 aaggtttatcgccgtaggcttaatgttgagggtggtaggggt 28245794  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 28245988 - 28246032
Alignment:
Q  300 caattttctgtttgaacatatggtcaaaggcttaaacagatggct 344  Q
    ||||||||||||| |||||||||||||| ||  ||||||||||||    
T  28245988 caattttctgtttaaacatatggtcaaaagccaaaacagatggct 28246032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 30146088 - 30146164
Alignment:
Q  54 caagggtctgtggcacgacaacatttggaggaagtatttagagagatttatggtgagaaggtttaccgtcgtaggca 130  Q
    ||||||||||  ||| | ||||||||||||||||| || |||||| |||||||||  |||||||| || ||||||||    
T  30146088 caagggtctgaagcatggcaacatttggaggaagtcttgagagaggtttatggtggcaaggtttatcgccgtaggca 30146164  T

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