View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_27 (Length: 330)
Name: NF4193_high_27
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 36979664 - 36979984
Alignment:
| Q |
1 |
atgccatatactcctcacttggaagcataacattacagactttacatattaatttggaattaatcatcctaaagggttctgaagggttcttctgcggagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36979664 |
atgccatatactcctcacttggaagcataacattacagactttacatattaatttggaattaatcatcctaaagggttctgaagggttcttctgcggagc |
36979763 |
T |
|
| Q |
101 |
aggttgcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgggaattcaaggttatctggctcgaagttgttaccaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36979764 |
aggttgcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgagaattcaaggttatctggctcgaagttgttaccaaa |
36979863 |
T |
|
| Q |
201 |
cataaagcacaagtccactctttctgcacttccttctgtgtagcagtagaactcggaggaacctctccaccagctgggtcactgccatctattcctttgg |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36979864 |
cataaagcacaagtccactctttcggcacttccttctgtgtagcagtagaactcggaggaacctctccaccagctgggtcactgccatctattcctttgg |
36979963 |
T |
|
| Q |
301 |
tttctgctatggttgatgatg |
321 |
Q |
| |
|
||||| ||||||||||||||| |
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|
| T |
36979964 |
tttctactatggttgatgatg |
36979984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 36978896 - 36979050
Alignment:
| Q |
89 |
cttctgcggagcaggttgcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgggaattcaaggttatctggctcgaa |
188 |
Q |
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||||||| |||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
36978896 |
cttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgat |
36978995 |
T |
|
| Q |
189 |
gttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtgtag |
243 |
Q |
| |
|
||||||||| | || ||||| |||| |||||||| ||||| ||||||||| |||| |
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| T |
36978996 |
gttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtag |
36979050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 106 - 283
Target Start/End: Original strand, 36984396 - 36984573
Alignment:
| Q |
106 |
gcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgggaattcaaggttatctggctcgaagttgttaccaaacataa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | | | | | ||||||||||||||| |
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| T |
36984396 |
gcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaagatgggaattcaatgttttttcacatggaactgttaccaaacataa |
36984495 |
T |
|
| Q |
206 |
agcacaagtccactctttctgcacttccttctgtgtagcagtagaactcggaggaacctctccaccagctgggtcact |
283 |
Q |
| |
|
|||||| | ||||||||||||||||||||| || | | |||||||||| | ||||||||| ||||| ||| |||||| |
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|
| T |
36984496 |
agcacatgcccactctttctgcacttccttttgcgcaatagtagaactctgtggaacctctacaccaactgtgtcact |
36984573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 134 - 274
Target Start/End: Original strand, 36986218 - 36986358
Alignment:
| Q |
134 |
agcagctctgtgtttcctcccattaatatgggaattcaaggttatctggctcgaagttgttaccaaacataaagcacaagtccactctttctgcacttcc |
233 |
Q |
| |
|
|||||||||||||||| | ||| | | |||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36986218 |
agcagctctgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttcc |
36986317 |
T |
|
| Q |
234 |
ttctgtgtagcagtagaactcggaggaacctctccaccagc |
274 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
36986318 |
ttctgtgtagaagtagaactctgaggaacctctccaccagc |
36986358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 36995583 - 36995883
Alignment:
| Q |
12 |
tcctcacttggaagcataacattacagactttacatattaatttggaattaatcatcctaaagggttctgaagggttcttctgcggagcaggttgcttct |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||| | | ||||||||||| |
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|
| T |
36995583 |
tcctcacttggaagcataatattacagactttacatattattttggaattaatcatcctaataggttctgataggttcttttgcagggtaggttgcttct |
36995682 |
T |
|
| Q |
112 |
ttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgggaattcaaggttatctggctcgaagttgttaccaaacataaagcaca |
211 |
Q |
| |
|
|||||||||| |||| || | |||||| |||| || | | |||||| |||||||| ||| | || | |||||||||||||||||||| |
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|
| T |
36995683 |
ttgctttcaa---cacttccatagtttccctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcaca |
36995779 |
T |
|
| Q |
212 |
agtccactctttctgcacttccttctgtgtagcagtagaactcggaggaacctctccaccagctgggtcactgccatctattcctttggtttctgctatg |
311 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||| | |||| | || |||||||||||||| |||| |
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|
| T |
36995780 |
agtccactctttctgcactgccttctgt------gtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttctattatg |
36995873 |
T |
|
| Q |
312 |
gttgatgatg |
321 |
Q |
| |
|
| |||||||| |
|
|
| T |
36995874 |
gctgatgatg |
36995883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 114 - 321
Target Start/End: Original strand, 37000387 - 37000591
Alignment:
| Q |
114 |
gctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgggaattcaaggttatctggctcgaagttgttaccaaacataaagcacaag |
213 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||||||| | ||||||||||| ||| ||| |||||| |||||||| | |||||||||||||| |
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|
| T |
37000387 |
gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttacaatacataaagcacaag |
37000486 |
T |
|
| Q |
214 |
tccactctttctgcacttccttctgtgtagcagtagaactcggaggaacctctccaccagctgggtcactgccatctattcctttggtttctgctatggt |
313 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| ||||||| |||| | ||| |||| ||| | |||||| | || ||||||| |||||| |||||| |
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|
| T |
37000487 |
tccacttcttcggcacttccttctgtgtagc---agaactctgaggtagctccccactagcagtgtcactctccgctgttccttttgtttcttctatgga |
37000583 |
T |
|
| Q |
314 |
tgatgatg |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
37000584 |
tgatgatg |
37000591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 36980538 - 36980640
Alignment:
| Q |
141 |
ctgtgtttcctcccattaatatgggaattcaaggttatctggctcgaagttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtg |
240 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| | ||| | ||| |||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
36980538 |
ctgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaaacatatagcacaagtccactctctctgcacttccttctgtg |
36980637 |
T |
|
| Q |
241 |
tag |
243 |
Q |
| |
|
||| |
|
|
| T |
36980638 |
tag |
36980640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 36996411 - 36996514
Alignment:
| Q |
139 |
ctctgtgtttcctcccattaatatgggaattcaaggttatctggctcgaagttgttaccaaacataaagcacaagtccactctttctgcacttccttctg |
238 |
Q |
| |
|
||||||||||||||||| | | || ||||||||| | | | ||| | |||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
36996411 |
ctctgtgtttcctcccagtgaggtgcgaattcaagtctttattgcttgtagttgttaccaaacataaagcacaagtccactttttctgcatttccttctg |
36996510 |
T |
|
| Q |
239 |
tgta |
242 |
Q |
| |
|
|||| |
|
|
| T |
36996511 |
tgta |
36996514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 37000306 - 37000371
Alignment:
| Q |
15 |
tcacttggaagcataacattacagactttacatattaatttggaattaatcatcctaaagggttct |
80 |
Q |
| |
|
||||||| || || |||||| |||||| ||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
37000306 |
tcacttgaaatcaaaacattgcagactatacatattattttggaattaatcctcctaaagggttct |
37000371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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