View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_31 (Length: 307)
Name: NF4193_high_31
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 2221332 - 2221178
Alignment:
| Q |
142 |
aagttgggtggagaatggaaaaatgaaaatactcttttattagttgaaatactttttcaatttttattttggtttgtgtataaggaagagaaaagcaatg |
241 |
Q |
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| T |
2221332 |
aagttgggtggagaatggaaaaatgaaaatactcttttattagttgaaatactttttcaatttttattttggtttgtgtataaggaagagaaaagcaatg |
2221233 |
T |
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| Q |
242 |
aattcttagttaaataggtgtattgaggttgtaaagagaaatagagaatgtgatg |
296 |
Q |
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| T |
2221232 |
aattcttagttaaatgggtgtattgaggttgtaaagagaaatagagaatgtgatg |
2221178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 2221449 - 2221378
Alignment:
| Q |
25 |
caatgtgattatcagttttttcaagttaatgttgttgaagttcacttgggtaaaaattggagattgtggtac |
96 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2221449 |
caatgtgattatcagttttttcaagtcaatgttgttgaagttcacttgggtaaaaattggagattgtggtac |
2221378 |
T |
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