View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4193_high_39 (Length: 276)

Name: NF4193_high_39
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4193_high_39
NF4193_high_39
[»] scaffold1805 (1 HSPs)
scaffold1805 (11-74)||(1105-1168)
[»] chr2 (1 HSPs)
chr2 (11-74)||(22394482-22394545)
[»] chr3 (4 HSPs)
chr3 (11-57)||(27980048-27980094)
chr3 (11-62)||(27389091-27389142)
chr3 (11-57)||(28005409-28005455)
chr3 (15-74)||(27379505-27379564)
[»] chr5 (1 HSPs)
chr5 (210-250)||(30224577-30224617)
[»] scaffold1163 (1 HSPs)
scaffold1163 (11-74)||(92-155)
[»] scaffold1142 (1 HSPs)
scaffold1142 (15-74)||(1632-1691)
[»] scaffold0043 (1 HSPs)
scaffold0043 (11-74)||(51861-51924)


Alignment Details
Target: scaffold1805 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 1105 - 1168
Alignment:
Q  11 acatcatcaactcatttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1105 acatcatcaactcatttagtaagttcatcaccaacttatagtatggagcaagggttggtccaat 1168  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 22394482 - 22394545
Alignment:
Q  11 acatcatcaactcatttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat 74  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  22394482 acatcagcaactcatttagtaagttcatcaccaacttatagtatgtatcatgggttggtccaat 22394545  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 27980048 - 27980094
Alignment:
Q  11 acatcatcaactcatttagtaagttcatcaccaacttatagtatgta 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27980048 acatcatcaactcatttagtaagttcatcaccaacttatagtatgta 27980094  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 27389142 - 27389091
Alignment:
Q  11 acatcatcaactcatttagtaagttcatcaccaacttatagtatgtagcaag 62  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  27389142 acatcatcaactcatttagtaagttcatcaccaatttatcgtatgtaacaag 27389091  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 28005409 - 28005455
Alignment:
Q  11 acatcatcaactcatttagtaagttcatcaccaacttatagtatgta 57  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  28005409 acatcgtcaactcatttagtaagttcctcaccaacttatagtatgta 28005455  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 27379505 - 27379564
Alignment:
Q  15 catcaactcatttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat 74  Q
    ||||| |||||||||||||||| ||||||||||||||| |||| | ||||||||| ||||    
T  27379505 catcagctcatttagtaagttcgtcaccaacttatagtgtgtaccgagggttggttcaat 27379564  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 30224617 - 30224577
Alignment:
Q  210 tttacctttcaagaacaaagatttcaccatcttctttctcg 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30224617 tttacctttcaagaacaaagatttcaccatcttctttctcg 30224577  T

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Target: scaffold1163 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 92 - 155
Alignment:
Q  11 acatcatcaactcatttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat 74  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||  ||||||  ||||||||    
T  92 acatcatcaactcatttagtaagttcgtcaccatcttatagtatgtcacaagggccggtccaat 155  T

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Target: scaffold1142 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 1632 - 1691
Alignment:
Q  15 catcaactcatttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat 74  Q
    |||||||||||||||||||||| ||||||||||||||| |||| | ||||||||| ||||    
T  1632 catcaactcatttagtaagttcgtcaccaacttatagtgtgtaccgagggttggttcaat 1691  T

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Target: scaffold0043 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 51924 - 51861
Alignment:
Q  11 acatcatcaactcatttagtaagttcatcaccaacttatagtatgtagcaagggttggtccaat 74  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||  ||||||  ||||||||    
T  51924 acatcatcaactcatttagtaagttcatcgccatcttatagtatgtcacaagggccggtccaat 51861  T

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