View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_42 (Length: 265)
Name: NF4193_high_42
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 36979358 - 36979604
Alignment:
| Q |
19 |
attggtctatacctcggtgttttctgcaaaatagcaaatcaagagtttgttgactccttaaaacatttacacggagtgattcttgccttttgttataatt |
118 |
Q |
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| T |
36979358 |
attggtctatacctcggtgttttctgcaaaatagcaaatcaagagtttgttgactccttaaaacatttacacggagtgattcttgccttgtgttataatt |
36979457 |
T |
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| Q |
119 |
atttgtcataccaaatagcaatacttaaactaataaagcattttccatttaagaattggcaatgttttggtacact---taatatcagtcaacaagcttg |
215 |
Q |
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| T |
36979458 |
atttgtcataccaaatagcaatacttaaactaataaagcattttccatttaagaattggcaatgttttggtacacttaataatatcagtcaagaagcttg |
36979557 |
T |
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| Q |
216 |
ctaccccaatttgcttttcaactttcaagcaaaatgtccctatgcta |
262 |
Q |
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| T |
36979558 |
ctaccccaatttgcttttcaactttcaagcaaaatgtccctacgcta |
36979604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 9450161 - 9450354
Alignment:
| Q |
34 |
ggtgttttctgcaaaatagcaaatcaagagtttgttgactccttaaaacatttacacggagtgattcttgccttttgttataattatttgtcataccaaa |
133 |
Q |
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| T |
9450161 |
ggtgttttatgcaaaatagcaaattaagagtttgttgactccttaaaacatttacacgtagtgattcttgccttttgttataattatttgtcataccaaa |
9450260 |
T |
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| Q |
134 |
tagcaatacttaaactaataaagcattttccatttaagaattggcaatgttttggtacacttaatatcagtcaacaagcttgctaccccaattt |
227 |
Q |
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| T |
9450261 |
tatcaatactcaaactaataaagcattttggattcaagaatcagcgatgtttaggtatacttaatatcagtcaagaagcttgctaccccaattt |
9450354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 36999977 - 37000216
Alignment:
| Q |
19 |
attggtctatacctcggtgttttctgcaaaatagcaaatcaagagtttgttgactccttaaaacatttacacggagtgattcttgccttttgttataa-- |
116 |
Q |
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| T |
36999977 |
attggtctatacctctatgttttccgccaaacagcagattaagagtttgttgacttcttaaaacattctcacgaaatgatacgtgcctttcgttataatt |
37000076 |
T |
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| Q |
117 |
--ttatttgtcatacc--aaatagcaatacttaaactaataaagcattttccatttaagaattggcaatgttttggtacacttaatatcagtcaacaa-g |
211 |
Q |
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| T |
37000077 |
gtttgtttgtcgtatcaaaaataacaatactcaaactaat-gatcattttccatttgaaaatcagcaaagttttggtacagctgttataagtgaagaagg |
37000175 |
T |
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| Q |
212 |
cttgctaccccaatttgcttttcaactttcaagcaaaatgt |
252 |
Q |
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| T |
37000176 |
cttgctacaccaatttccttttcaactttcaagcaaaatgt |
37000216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 36995400 - 36995495
Alignment:
| Q |
154 |
aagcattttccatttaagaattggcaatgttttggtacacttaatatcagtcaacaag-cttgctaccccaatttgcttttcaactttcaagcaaa |
248 |
Q |
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| T |
36995400 |
aagcattttccattttagaatcagcaatgttatggtacagctattatcagtggagaaggcttgctacaccaattttcttttcaactttcaagcaaa |
36995495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 14160046 - 14159853
Alignment:
| Q |
34 |
ggtgttttctgcaaaatagcaaatcaagagtttgttgactccttaaaacatttacacggagtgattcttgccttttgttataattatttgtcataccaaa |
133 |
Q |
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| T |
14160046 |
ggtgttttatgcaaaatagcaaattaagagtttgttgactccttaaaacatttacacgtagtgattcttgcctttggttataattatttgtcataccaaa |
14159947 |
T |
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| Q |
134 |
tagcaatacttaaactaataaagcattttccatttaagaattggcaatgttttggtacacttaatatcagtcaacaagcttgctaccccaattt |
227 |
Q |
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| T |
14159946 |
tagcaatactcaaactaataaagcattttcgattcaagaatcagcgatgtttaggtatacttaatatcagtcaagaagcttgctaccccaattt |
14159853 |
T |
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