View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_46 (Length: 255)
Name: NF4193_high_46
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 11544990 - 11545239
Alignment:
| Q |
1 |
cttctttgaatgtgtgtttcatttttcaaaattttcagataaaagatgcatgcttctatagttttgatacatttagagaccaaatgattgtttactctat |
100 |
Q |
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| T |
11544990 |
cttctttgaatgtgtgtttcattttacaaaattttcagataaaagatgcatgcttctatagttttgatacatttagagaccaaatgattgtttactctat |
11545089 |
T |
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| Q |
101 |
aattttctttgaatgactctaatttaattgatagtttgattttgagttcacataattgttaatggttacttgttaataattttcttttagtgggatggtc |
200 |
Q |
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| T |
11545090 |
aattttatttgaatgactctaatttaattgatagtttgattttgagttcacataattgttaatggttacttgttaataattttcttttagtgggatggtc |
11545189 |
T |
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| Q |
201 |
tttcttgtggaaatccaatgcatgaaatcgcacacatttcaaatggacct |
250 |
Q |
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| T |
11545190 |
tttcttgtggaaatccaatgcatgaaattgcacacatttcaaatggacct |
11545239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 11558529 - 11558700
Alignment:
| Q |
78 |
gaccaaatgattgtttactctataattttctttgaatgactctaatttaattgatagtttgattttgagttcacataattgttaatgg-ttacttgttaa |
176 |
Q |
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| T |
11558529 |
gacccaataattatttactatataattta-tttgaatgactctaatttaattgatagtttaattttgagttcacataattattaacgggttacttgttaa |
11558627 |
T |
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| Q |
177 |
taattttcttttagtgggatggtctttcttgtggaaatccaatgcatgaaatcgcacacatttcaaatggacc |
249 |
Q |
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| T |
11558628 |
taattttgttatagtggaatggtctttcttgtggaaatccaatgcatgaaattgcacacatttcaaatggacc |
11558700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 12064194 - 12064134
Alignment:
| Q |
189 |
agtgggatggtctttcttgtggaaatccaatgcatgaaatcgcacacatttcaaatggacc |
249 |
Q |
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| T |
12064194 |
agtgggatggtctttcttgtggaaatccaatgcatgaaatcgcacacatttcaaatggacc |
12064134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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