View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_55 (Length: 246)
Name: NF4193_high_55
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 5306641 - 5306449
Alignment:
| Q |
20 |
ttgtgcacatataaaatatatgtgaaaacatataccaatagagaaactgcagctataatagacactgcagtagtatttaggtttagaagcatggaaattg |
119 |
Q |
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| T |
5306641 |
ttgtgcacatataaaatatatgtgaaaacatataccaatagagaaactgcagctataatagacactgcagtagtatttaggtttagaagcatggaaattg |
5306542 |
T |
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| Q |
120 |
agtgaatgtttttaatatgaaaaaattgtaggctaagtgaaaatctgagaatagagtttctctgtttgttatgtatttcctttaggttttggt |
212 |
Q |
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| T |
5306541 |
agtgaatgtttttaatatgaaaaaattggaggctaagtgaaaatctgagaatagagtttctctgtttgttatgtatttcctttaggttttggt |
5306449 |
T |
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Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 54732561 - 54732369
Alignment:
| Q |
20 |
ttgtgcacatataaaatatatgtgaaaacatataccaatagagaaactgcagctataatagacactgcagtagtatttaggtttagaagcatggaaattg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54732561 |
ttgtgcacatataaaatatatgtgaaaacatataccaatagagaaactgcagctataatagacactgcagtagtatttaggtttagaagcatggaaattg |
54732462 |
T |
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| Q |
120 |
agtgaatgtttttaatatgaaaaaattgtaggctaagtgaaaatctgagaatagagtttctctgtttgttatgtatttcctttaggttttggt |
212 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54732461 |
agtgaatgtttttaatatgaaaaaattggaggctaagtgaaaatctgagaatagagtttctctgtttgttatgtatttcctttaggttttggt |
54732369 |
T |
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