View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4193_high_58 (Length: 240)
Name: NF4193_high_58
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_58 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 32812264 - 32812501
Alignment:
| Q |
1 |
attgattacttgtgtcaagttttcttattttcatatataatttaaatttaaatctacatttgacattaatttcaaggtgaaagttgattccttatattca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
32812264 |
attgattacctgtgtcaagttttcttattttcatatataatttaaatttaaatctacatttgatattaatttcaaggtgaaagttgattcc-tatatccg |
32812362 |
T |
|
| Q |
101 |
tgcaactgtgtccatgatggactgctgcttactagtatgtatttattaaacatt-------------atggataggagaggaaccatcgc--acgcagtt |
185 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
32812363 |
cgtaactgtgtccatgatggactgctgcttactagtatgtattcattaaacattatggttacattacatggataggagaggaaccatcacagacgcagtt |
32812462 |
T |
|
| Q |
186 |
gtgactaatatcaaatctaagaatcatataagttcaata |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32812463 |
gtgactaatatcaaatctaagaatcatataagttcaata |
32812501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 32790131 - 32790283
Alignment:
| Q |
6 |
ttacttgtgtcaagttttcttattttcatatataatttaaatttaaatctacatttgacattaatttcaaggtgaaagttgattccttatattcatgcaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | ||| |
|
|
| T |
32790131 |
ttacttgtgtcaagttttcttattttcatatatagtttaaatttaaacctacatttgacattaatttcgacgtgaaagttgattccttatatccgcacaa |
32790230 |
T |
|
| Q |
106 |
ctgtgtccatgatggactgctgcttactagtatgtatttattaaacattatgg |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32790231 |
ctgtgtccatgatggactgctgcttactagtatgtattcattaaacattatgg |
32790283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 28213485 - 28213630
Alignment:
| Q |
13 |
tgtcaagttttcttattttcatatataatttaaatttaaatctacatttgacattaatttcaaggtgaaagttgattccttatattcatgcaactgtgtc |
112 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| | ||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
28213485 |
tgtcaagttttcttattttcatttatagtttaaatttgaatctacatttgacattaattttgacgtgaaagttgattccatatatccgtgcaactgtgtc |
28213584 |
T |
|
| Q |
113 |
catgatggactgctgcttactagtatgtatttattaaacattatgg |
158 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28213585 |
catgatggacttctgcttactagtatgtatttattaaacattatgg |
28213630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 32311301 - 32311205
Alignment:
| Q |
1 |
attgattacttgtgtcaagttttcttattttcatatataatttaaatttaaatctacatttgacattaatttcaaggtgaaagttgattccttatat |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
32311301 |
attgattacttgtgtcaagttttcttattttcatatatagtttaaattaaaacctacatttgacattaatttcgacatgaaagttgattccttatat |
32311205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 32799083 - 32799183
Alignment:
| Q |
58 |
atttgacattaatttcaaggtgaaagttgattccttatattcatgcaactgtgtccatgatggactgctgcttactagtatgtatttattaaacattatg |
157 |
Q |
| |
|
|||| ||||||| ||| | ||||| ||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
32799083 |
atttaacattaagttcgacgtgaaggttgattccttatatccgcgcaactgtgtccgtaatggactgctgcttactagtatgtattcatcaaacattatg |
32799182 |
T |
|
| Q |
158 |
g |
158 |
Q |
| |
|
| |
|
|
| T |
32799183 |
g |
32799183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 32306908 - 32306827
Alignment:
| Q |
77 |
gtgaaagttgattccttatattcatgcaactgtgtccatgatggactgctgcttactagtatgtatttattaaacattatgg |
158 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
32306908 |
gtgaaggttgattccttatatctgcgcaactctgtccatgatggactgtagcttactagtatgtattcatcaaacattatgg |
32306827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 32311188 - 32311116
Alignment:
| Q |
145 |
attaaacattatggataggagaggaaccatcgc--acgcagttgtgact---aatatcaaatctaagaatcat |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | | |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
32311188 |
attaaacattatggataggacaggaaccatcacagaagcagttgtgacttgcaatatcatatctaagaatcat |
32311116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 31783757 - 31783696
Alignment:
| Q |
77 |
gtgaaagttgattccttatattcatgcaactgtgtccatgatggactgctgcttactagtat |
138 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31783757 |
gtgaaagttgattccttatatccgtgcaactgtgtccatgatggactgctgcttactagtat |
31783696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University