View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_6 (Length: 561)
Name: NF4193_high_6
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 8 - 547
Target Start/End: Original strand, 6985298 - 6985840
Alignment:
| Q |
8 |
aaggaagaaatctctatgtaaaaagaggaataaaaaatagtttctattaaatgtctttctatgccatatttgctggattgacaaaaacttgtgagacatt |
107 |
Q |
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| T |
6985298 |
aaggaagaaatctctatgtaaaaagaggaataaaaaatagtttctattaaatgtctttctatgccatatttgctggattgacaaaaacttgtgagacatt |
6985397 |
T |
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| Q |
108 |
acacattttaccttgcgacataggtgattttgttaagtataa---taaagatatgttaatctttgcagtttttgaagtaagattataataatttctttca |
204 |
Q |
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| T |
6985398 |
acacattttaccttgcgacataggtgattttgttaagtataataataaagatatgttaatctttacagtttttgaagtaagattataataatttcttaaa |
6985497 |
T |
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| Q |
205 |
taatagtacagtaatttatttcattttggagtatgtttgttataatataaaataaattatgtcacaagtatgtaataatcacaatagtattttctattca |
304 |
Q |
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| T |
6985498 |
taatagtacagtaatttatttctttttggagtatgtttgttataatataaaataaattatgtcacaagtatgtaataatcacaatagtattttctattca |
6985597 |
T |
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| Q |
305 |
actaaaaaaggtaaataattgtgaaaattaaatacaaaccacttgacagaattaaaagatttcaggatttcttaaatacaattgcttgctaaagaaggta |
404 |
Q |
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| T |
6985598 |
actaaaaaaggtaaataattgtgaaaattaaatacaaaccacttgacagaattaaaagatttcaggatttcttaaatacaattgcttgctaaagaaggta |
6985697 |
T |
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| Q |
405 |
tgtccaattcattttaatcacgtcagctctttgaataagatgaaaaagtacagtccccatttaggcaggaagggttaattgggactcacaaattacaccc |
504 |
Q |
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| T |
6985698 |
tgtccaattcattttaatcacgtcagctctttgaataagatgaaaaagtacagtccccatttaggcaggaaaggttaattgggactcacaaattacaccc |
6985797 |
T |
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| Q |
505 |
taaaccattttgattaaataaaatacatgcttcatgcaaatgt |
547 |
Q |
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| T |
6985798 |
taaaccattttgattaaataaaatacatgcttcatgcacatgt |
6985840 |
T |
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