View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_66 (Length: 220)
Name: NF4193_high_66
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 36070630 - 36070435
Alignment:
| Q |
17 |
acttgcaggagcaacccaaatatgaagttggtaagtgttttttcttctttcttaatcttatctcaataatgtggctgcttcttgtattttcttatatata |
116 |
Q |
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| T |
36070630 |
acttgcaggagcaacccaaatatgaagttggtaagtgttttttcttctttcttaatcttatctcaataatgtggctgcttcttgtattttcttatatata |
36070531 |
T |
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| Q |
117 |
tttattatcttgttaatttgtttgcattaggatcggatcaaatgcattcttctaataatgaagaaatagaagaaaatggtgaaaaggatgatgatg |
212 |
Q |
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| T |
36070530 |
tttattatcttgttaatttgtttgcattaggatcggatcaaatgcattcttctaataatgaagaagtagaagaaaatggtgaaaaggatgatgatg |
36070435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 29029643 - 29029571
Alignment:
| Q |
109 |
tatatatatttattatcttgttaatttgtttgcattaggatcggatcaaatgcattcttctaataatgaagaa |
181 |
Q |
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| T |
29029643 |
tatatatatttattatcttgcttatttgtttgcattagaatcagatcaaatgcatatgtctgataatgaagaa |
29029571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 29029750 - 29029690
Alignment:
| Q |
54 |
ttttttcttctttcttaatcttatctcaataat---gtggctgcttcttgtattttcttat |
111 |
Q |
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|||||||||| |||||||||||||||||||||| | | |||||||||||||||||||| |
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| T |
29029750 |
ttttttcttccttcttaatcttatctcaataatataattgttgcttcttgtattttcttat |
29029690 |
T |
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