View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4193_high_67 (Length: 216)
Name: NF4193_high_67
Description: NF4193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4193_high_67 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 11901998 - 11901807
Alignment:
| Q |
5 |
cactctttgtggccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctaga |
104 |
Q |
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| T |
11901998 |
cactctttgtggccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccggttggaaatatcgcatctaga |
11901899 |
T |
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| Q |
105 |
acaagtcatgttctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
196 |
Q |
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| T |
11901898 |
acaagtcatgttctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
11901807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 11860570 - 11860747
Alignment:
| Q |
16 |
gccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatgt |
115 |
Q |
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| T |
11860570 |
gccagcaagaaacaagt---cacgggaggactaagatcactcacagatcttaacaatctgagaggccacttggaaatttctcatcttgaacaagtcaagt |
11860666 |
T |
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| Q |
116 |
tctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
196 |
Q |
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| T |
11860667 |
tctctccatcaaaggaagctgctaaagatgattttttgaaaaataagcaacacctcgagttcttgactctaagatgggatc |
11860747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 11828435 - 11828612
Alignment:
| Q |
16 |
gccagcaagaaacaagtaatcactggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatgt |
115 |
Q |
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| T |
11828435 |
gccagcaagaaacaagt---cacgggaggactaagatcactcacagatcttaacaatctgaggggccacttggaaattatgcatctggaacaaatcaagt |
11828531 |
T |
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| Q |
116 |
tctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
196 |
Q |
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| T |
11828532 |
tctctccatcaaaagaagctgctaaagatgattttttgaaaaataaacaacaccttgagttcttgactctaagatgggatc |
11828612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 12039356 - 12039512
Alignment:
| Q |
40 |
ggaggactaagagaactcacggatcttaacaatctgagaggccagttagaaatatcgcatctagaacaagtcatgttctctccatctaaggaagctgctc |
139 |
Q |
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| T |
12039356 |
ggaggactaagagaactcaccgatctcaacaaactgagaggtcacatggaaatttcgcatctggaacaagtcaagttctcgcaatccaaggaaattgcta |
12039455 |
T |
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| Q |
140 |
aagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatgggatc |
196 |
Q |
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| T |
12039456 |
aagatgaatttttgaaaaacaaaaaataccttgggttcttgactctaagatgggatc |
12039512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 11732295 - 11732393
Alignment:
| Q |
96 |
gcatctagaacaagtcatgttctctccatctaaggaagctgctcaagatgaatttctgaaaaataaacaacaccttgagtttttgactctaagatggga |
194 |
Q |
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| T |
11732295 |
gcatctggagcaagtcaagttctctccatccaacgaagcggctaaagatgaatttgtgaaaaataaacaacacattcagcatttgactctaagatggga |
11732393 |
T |
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